update CI and full size test

nf-core · Jun 16, 2022 · ec6628f · ec6628f
1 parent 27fdb8b
commit ec6628f
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Showing 3 changed files with 5 additions and 3 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -33,7 +33,7 @@ jobs:
  "test,docker --aligner alevin",
  "test,docker --aligner kallisto",
  "test,docker --aligner star",
- "test,docker --aligner cellranger",
+ "test,docker --aligner cellranger -stub",
  ]
  steps:
  - name: Check out pipeline code

diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -7,6 +7,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - Pipeline ported to dsl2
 - Template update with latest nf-core/tools v2.1
+- Added cellranger v.7.0.0 subworkflow
+- Added full size tests
 
 ### Fixes
 

diff --git a/conf/test_full.config b/conf/test_full.config
@@ -16,8 +16,8 @@ params {
 
  // Input data
  input = 'https://raw.githubusercontent.com/nf-core/test-datasets/scrnaseq/samplesheet_2.0_full.csv'
- genome_fasta = 's3://nf-core-awsmegatests/scrnaseq/input_data/Homo_sapiens.GRCh38.dna.primary_assembly.modified.fa'
- gtf = 's3://nf-core-awsmegatests/scrnaseq/input_data/gencode.v32.primary_assembly.annotation.filtered.gtf'
+ genome_fasta = 's3://nf-core-awsmegatests/scrnaseq/input_data/Homo_sapiens.GRCh38.dna.primary_assembly.fa'
+ gtf = 's3://nf-core-awsmegatests/scrnaseq/input_data/Homo_sapiens.GRCh38.106.gtf'
  protocol = '10XV2'
  schema_ignore_params = 'genomes'
 }