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update CI and full size test #112

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Jun 16, 2022
Merged

update CI and full size test #112

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2 changes: 1 addition & 1 deletion .github/workflows/ci.yml
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Expand Up @@ -33,7 +33,7 @@ jobs:
"test,docker --aligner alevin",
"test,docker --aligner kallisto",
"test,docker --aligner star",
"test,docker --aligner cellranger",
"test,docker --aligner cellranger -stub",
]
steps:
- name: Check out pipeline code
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -7,6 +7,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

- Pipeline ported to dsl2
- Template update with latest nf-core/tools v2.1
- Added cellranger v.7.0.0 subworkflow
- Added full size tests

### Fixes

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4 changes: 2 additions & 2 deletions conf/test_full.config
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Expand Up @@ -16,8 +16,8 @@ params {

// Input data
input = 'https://raw.githubusercontent.com/nf-core/test-datasets/scrnaseq/samplesheet_2.0_full.csv'
genome_fasta = 's3://nf-core-awsmegatests/scrnaseq/input_data/Homo_sapiens.GRCh38.dna.primary_assembly.modified.fa'
gtf = 's3://nf-core-awsmegatests/scrnaseq/input_data/gencode.v32.primary_assembly.annotation.filtered.gtf'
genome_fasta = 's3://nf-core-awsmegatests/scrnaseq/input_data/Homo_sapiens.GRCh38.dna.primary_assembly.fa'
gtf = 's3://nf-core-awsmegatests/scrnaseq/input_data/Homo_sapiens.GRCh38.106.gtf'
protocol = '10XV2'
schema_ignore_params = 'genomes'
}