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Fix centrifuge on conda via version bump #561

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Dec 19, 2024
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8 changes: 8 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -7,10 +7,18 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Added`

- [#558](https://github.com/nf-core/taxprofiler/pull/558) Updated to nf-core pipeline template v3.1.0 (added by @LilyAnderssonLee)

### `Fixed`

- [#561](https://github.com/nf-core/taxprofiler/pull/561) Updated Centrifuge to fix internal error when running with conda (❤️ to @AnotherSimon for reporting, fix by @jfy133)

### `Dependencies`

| Tool | Previous version | New version |
| ---------- | ---------------- | ----------- |
| centrifuge | 1.0.4.1 | 1.0.4.2 |

### `Deprecated`

## v1.2.1 - Bouncy Basenji Patch [2024-11-28]
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4 changes: 2 additions & 2 deletions modules.json
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Expand Up @@ -42,12 +42,12 @@
},
"centrifuge/centrifuge": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"git_sha": "8581a564b0acbe28e222570ce395278f91705dc5",
"installed_by": ["modules"]
},
"centrifuge/kreport": {
"branch": "master",
"git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
"git_sha": "8581a564b0acbe28e222570ce395278f91705dc5",
"installed_by": ["modules"]
},
"diamond/blastx": {
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3 changes: 2 additions & 1 deletion modules/nf-core/centrifuge/centrifuge/environment.yml

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42 changes: 22 additions & 20 deletions modules/nf-core/centrifuge/centrifuge/main.nf

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119 changes: 73 additions & 46 deletions modules/nf-core/centrifuge/centrifuge/meta.yml

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3 changes: 2 additions & 1 deletion modules/nf-core/centrifuge/kreport/environment.yml

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17 changes: 10 additions & 7 deletions modules/nf-core/centrifuge/kreport/main.nf

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55 changes: 29 additions & 26 deletions modules/nf-core/centrifuge/kreport/meta.yml

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