Uncompressed bacteria genome #377
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add test dataset for hicar
Revert "add test dataset for hicar"
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Can you please add some documentation here: https://github.com/nf-core/test-datasets/blob/modules/README.md? |
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@priyanka-surana if this is for a module, you can also include the UNZIP module to decompress the input prior to sending to BUSCO. Alternatively, you can just allow gzipped Input, and just run I've seen @grst and @maxibor do this (I'm on my phone so can't find an example atm) |
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@jfy133 The busco module tests include gunzip-ing genomes. Test main.nf: https://github.com/priyanka-surana/modules/blob/busco/tests/modules/busco/main.nf BUSCO PR: nf-core/modules#987 Should I delete this PR? |
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If it's unnecessary now, then yes :) |
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I am writing a BUSCO module which needs a uncompressed genome file. It doesn't work with sars-cov and human available.