Skip to content

Issues: nf-core/tools

[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
Open
Download: Fix support for Seqera Community Containers
#3179 opened Sep 24, 2024 by MatthiasZepper
Open 5
Renovate Dashboard 🤖
#2596 opened Dec 19, 2023 by renovate bot
Open
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

270 Open 829 Closed
270 Open 829 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Fix sync PRs failing when the pipeline is missing manifest.author bug Something isn't working
#3373 opened Dec 20, 2024 by mirpedrol 3.1.2
Pre-commit failing when we sync pipelines bug Something isn't working
#3372 opened Dec 20, 2024 by mirpedrol 3.1.2
Remove hyphens from pipeline names in Nextflow workflows enhancement
#3365 opened Dec 18, 2024 by adamrtalbot
1
modules lint --fix changes more entries in the meta.yml than expected bug Something isn't working
#3363 opened Dec 17, 2024 by famosab
nf-core pipelines rocrate does not know about the contributors field introduced in nextflow.config by Nextflow 24.10.0 bug Something isn't working
#3361 opened Dec 17, 2024 by charles-plessy
Add beautiful citation directions via CITATION.cff in template enhancement
#3360 opened Dec 13, 2024 by d4straub
8
Pipeline template: only run linting and precommit if only markdown files changed in a PR enhancement
#3352 opened Dec 12, 2024 by jfy133
1
Lint nf-test snapshots for the word "false" enhancement
#3346 opened Dec 11, 2024 by mahesh-panchal
Package nextflow plugins with nf-core download enhancement
#3344 opened Dec 11, 2024 by fa2k
Bad behavior when .nf-core.yml is absent from current directory bug Something isn't working
#3340 opened Dec 10, 2024 by AlexVCaron
3
Schema: Conditional show / hide of parameters schema
#3320 opened Dec 4, 2024 by ewels
Make main default for all nf-core repos
#3316 opened Dec 3, 2024 by mashehu
Add opt-in option to template features enhancement
#3315 opened Dec 3, 2024 by mirpedrol
3 tasks
3.2
Automated suggestions for semantic release number enhancement
#3314 opened Dec 3, 2024 by pinin4fjords
Pipeline schema build help modal loses text area focus bug Something isn't working
#3312 opened Dec 2, 2024 by swingingsimian
1
Conda install nf-core cli on mac arm64 fails bug Something isn't working
#3303 opened Nov 28, 2024 by swingingsimian
Include config modules.config in the wrong place ? bug Something isn't working
#3300 opened Nov 27, 2024 by LouisLeNezet
1
12
nf-core subworkflows lint nf-test directory is missing rule is inconsistent bug Something isn't working
#3297 opened Nov 25, 2024 by edmundmiller
@edmundmiller
1
Lint pipelines nextflow schema against the meta schema enhancement pipeline-testing schema template nf-core pipeline/component template
#3288 opened Nov 20, 2024 by mirpedrol
5 tasks
Documentation shows the old commands without pipelines prefix bug Something isn't working documentation
#3287 opened Nov 20, 2024 by mirpedrol
Values in comments are read when creating template for meta.yml from input options bug Something isn't working
#3286 opened Nov 18, 2024 by zachary-foster 3.2
1
download pipelines fails with some seqera containers bug Something isn't working download nf-core download
#3285 opened Nov 18, 2024 by znorgaard
@MatthiasZepper
4
linting fails to execute if "----" present in module patch diff file bug Something isn't working
#3281 opened Nov 15, 2024 by znorgaard
Allow skipping linting of specific subworkflows enhancement good-first-issue linting
#3278 opened Nov 14, 2024 by mirpedrol
Lint that module nf-tests use a single config with sourcing the args from params enhancement
#3277 opened Nov 14, 2024 by mahesh-panchal
ProTip! Add no:assignee to see everything that’s not assigned.