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nf-core lint --key <module_test> runs pipeline lint tests #1681

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ErikDanielsson opened this issue Jul 19, 2022 · 1 comment · Fixed by #1682
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nf-core lint --key <module_test> runs pipeline lint tests #1681

ErikDanielsson opened this issue Jul 19, 2022 · 1 comment · Fixed by #1682
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@ErikDanielsson
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Description of the bug

Specifying a module lint test using the --key flag when running nf-core lint runs all pipeline lint tests.

Command used and terminal output

$ nf-core lint -k main_nf 

╭─ [?] 3 Pipeline Tests Ignored 
...
╭─ [!] 1 Pipeline Test Warning 
...
╭─ [✗] 5 Pipeline Tests Failed
...

System information

nf-core/tools 2.5dev
@ErikDanielsson ErikDanielsson added the bug Something isn't working label Jul 19, 2022
@ErikDanielsson ErikDanielsson self-assigned this Jul 19, 2022
@ErikDanielsson ErikDanielsson mentioned this issue Jul 19, 2022
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@ErikDanielsson ErikDanielsson linked a pull request Jul 19, 2022 that will close this issue
Fix --key flag for nf-core lint for module lint tests #1682
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@ErikDanielsson
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Closing due to merge of #1682

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Fix --key flag for nf-core lint for module lint tests ErikDanielsson/tools
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@ErikDanielsson