nf-core launch fails with Could not find pipeline: when choosing pipeline and revision interactively

[alneberg]

Description of the bug

Selecting the pipeline and revision interactively results in a "Could not find pipeline" error.

The cause is most likely that it gives a badly formatted revision string to nextflow pull command. Using pdb I was able to dig out the command that caused the error:

AssertionError: Command 'nextflow pull nf-core/taxprofiler -r ('1.0.1', ['dev', '1.0.1', '1.0.0', 'dev', 'donotdelete-pep-backup', 'feat/nf-tests', 'feature/kreport2krona', 'ganon-fix-database-linking', 'krona-subworkflow', 'master', 'unit-tests', 'update-taxpasta-0.4.1'])' returned non-zero error code '1':

where the correct command should be just

nextflow pull nf-core/taxprofiler -r 1.0.1

Command used and terminal output

nextflow pull nf-core/taxprofiler
Checking nf-core/taxprofiler ...
 Already-up-to-date - revision: 07b926a89e [master]
❯ nf-core launch

                                          ,--./,-.
          ___     __   __   __   ___     /,-._.--~\
    |\ | |__  __ /  ` /  \ |__) |__         }  {
    | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                          `._,._,'

    nf-core/tools version 2.9 - https://nf-co.re/


? Launch local pipeline or remote GitHub pipeline? Remote pipeline
? Pipeline name: taxprofiler
INFO     NOTE: This tool ignores any pipeline parameter defaults overwritten by Nextflow config files or profiles

? Select release / branch: 1.0.1  [release]
INFO     Downloading workflow: nf-core/taxprofiler (('1.0.1', ['dev', '1.0.1', '1.0.0', 'dev', 'donotdelete-pep-backup', 'feat/nf-tests', 'feature/kreport2krona', 'ganon-fix-database-linking', 'krona-subworkflow', 'master', 'unit-tests', 'update-taxpasta-0.4.1']))
ERROR    Could not find pipeline: nf-core/taxprofiler (None)

System information

Nextflow version 23.04.3.5875
tools version 2.9

[alneberg]

Nevermind, this exact issue was fixed by #2375 .