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If we use nf-core modules list local we get a nice output of all modules. If we use nf-core modules list local --json we get a blank list. Example from fetchngs but it also happens on rnaseq.
Command used and terminal output
> nf-core modules list local ,--./,-. ___ __ __ __ ___ /,-._.--~\ |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/tools version 2.11.1 - https://nf-co.reINFO Modules installed in '.': ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━┓┃ Module Name ┃ Repository ┃ Version SHA ┃ Message ┃ Date ┃┡━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━┩│ custom/sratoolsncbisettings │ https://github.com/nf-core/modules.git │ 20e78a9868eaa69c8cac91152397def32374b807 │ Replace base path for test data with new form (#4723) │ 2024-01-12 ││ sratools/fasterqdump │ https://github.com/nf-core/modules.git │ 20e78a9868eaa69c8cac91152397def32374b807 │ Replace base path for test data with new form (#4723) │ 2024-01-12 ││ sratools/prefetch │ https://github.com/nf-core/modules.git │ 20e78a9868eaa69c8cac91152397def32374b807 │ Replace base path for test data with new form (#4723) │ 2024-01-12 ││ untar │ https://github.com/nf-core/modules.git │ 20e78a9868eaa69c8cac91152397def32374b807 │ Replace base path for test data with new form (#4723) │ 2024-01-12 │└─────────────────────────────┴────────────────────────────────────────┴──────────────────────────────────────────┴───────────────────────────────────────────────────────┴────────────┘
> nf-core modules list local --json ,--./,-. ___ __ __ __ ___ /,-._.--~\ |\ | |__ __ / ` / \ |__) |__ } { | \| | \__, \__/ | \ |___ \`-._,-`-, `._,._,' nf-core/tools version 2.11.1 - https://nf-co.re[]
System information
nf-core, version 2.11.1
The text was updated successfully, but these errors were encountered:
Description of the bug
If we use
nf-core modules list local
we get a nice output of all modules. If we usenf-core modules list local --json
we get a blank list. Example from fetchngs but it also happens on rnaseq.Command used and terminal output
System information
nf-core, version 2.11.1
The text was updated successfully, but these errors were encountered: