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Event entry for nf-4bioimage workhop
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---
title: Bioimage Analysis Workshop - September 2024 (Tübingen)
subtitle: An in-person and online bioimage analysis workshop in Tübingen
type: hackathon
startDate: '2024-09-26'
startTime: '09:00+02:00'
endDate: '2024-09-27'
endTime: '18:00+02:00'
locations:
- name: Quantitative Biology Center (QBiC), University of Tübingen, Germany
geoCoordinates: [48.532, 9.0457]
- name: Online via Gather Town
---

# nf-4bioimage workshop

Join us for an exciting **Bioimage Analysis Workshop** in **Tübingen** on **September 26th and 27th, 2024**! This event will bring together experts from both the **Nextflow/nf-core** and **OME/Bioimage** communities, featuring presentations, hands-on training, and collaborative sessions.

The workshop will be held **in-person** at the Quantitative Biology Center (QBiC) and will also be accessible **online via Gather Town**.

[Register for the event here](https://forms.gle/kQRK7Ycvrpsyyew7A)

## Topics

This workshop is a fantastic opportunity to work on bioimage analysis using Nextflow, nf-core, and OME tools. We will cover a range of bioimage modalities, including:

- **Light-sheet microscopy**
- **MACSima/CODEX**
- **MRI/CT scale imaging**

The goal is to foster collaboration and exchange knowledge across the bioimage and Nextflow communities.

## Schedule

The event will be spread across two days, with a mix of presentations and practical sessions:

<table class="table">
<tr>
<th>Time</th>
<th>Thursday, September 26th</th>
<th>Friday, September 27th</th>
</tr>
<tr>
<td>09:00</td>
<td></td>
<td>Presentations IV</td>
</tr>
<tr>
<td>10:00</td>
<td>Reception</td>
<td rowspan="3" class="highlight">Hands-on Sessions</td>
</tr>
<tr>
<td>11:00</td>
<td>Event Opening</td>
</tr>
<tr>
<td>11:15</td>
<td>Presentations I</td>
</tr>
<tr>
<td>12:15</td>
<td>Lunch</td>
<td>Lunch</td>
</tr>
<tr>
<td>13:00</td>
<td>Presentations II</td>
<td>Presentations V</td>
</tr>
<tr>
<td>14:00</td>
<td>Break</td>
<td>Break</td>
</tr>
<tr>
<td>15:00</td>
<td>Hands-on sessions</td>
<td rowspan="2" class="highlight">Hands-on Sessions</td>
</tr>
<tr>
<td>16:00</td>
<td>Presentations III</td>
</tr>
<tr>
<td>17:00</td>
<td>Hands-on Sessions</td>
<td>Closing Remarks</td>
</tr>
<tr>
<td>18:00</td>
<td>Get-together party</td>
<td></td>
</tr>
</table>

**Hands-on Sessions**:

- Nextflow and nf-core
- OME tools and standards (Bio-formats, OMERO, OME-Zarr)
- Advanced tools for bioimage processing

## Venue and virtual platform

**Location**:
Quantitative Biology Center (QBiC), University of Tübingen
M3 Building, Otfried-Müller-Straße 37, 72076 Tübingen, Germany
**Online Location**: [Gather Town](https://www.gather.town)

## Contact

For any inquiries, feel free to reach out:
[luis.kuhn-cuellar@qbic.uni-tuebingen.de](mailto:luis.kuhn-cuellar@qbic.uni-tuebingen.de)

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