-
Notifications
You must be signed in to change notification settings - Fork 196
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge pull request #2704 from mbruhns/bioimaging_workshop
Event entry for nf-4bioimage workhop
- Loading branch information
Showing
1 changed file
with
113 additions
and
0 deletions.
There are no files selected for viewing
113 changes: 113 additions & 0 deletions
113
sites/main-site/src/content/events/2024/bioimage_workshop.md
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,113 @@ | ||
--- | ||
title: Bioimage Analysis Workshop - September 2024 (Tübingen) | ||
subtitle: An in-person and online bioimage analysis workshop in Tübingen | ||
type: hackathon | ||
startDate: '2024-09-26' | ||
startTime: '09:00+02:00' | ||
endDate: '2024-09-27' | ||
endTime: '18:00+02:00' | ||
locations: | ||
- name: Quantitative Biology Center (QBiC), University of Tübingen, Germany | ||
geoCoordinates: [48.532, 9.0457] | ||
- name: Online via Gather Town | ||
--- | ||
|
||
# nf-4bioimage workshop | ||
|
||
Join us for an exciting **Bioimage Analysis Workshop** in **Tübingen** on **September 26th and 27th, 2024**! This event will bring together experts from both the **Nextflow/nf-core** and **OME/Bioimage** communities, featuring presentations, hands-on training, and collaborative sessions. | ||
|
||
The workshop will be held **in-person** at the Quantitative Biology Center (QBiC) and will also be accessible **online via Gather Town**. | ||
|
||
[Register for the event here](https://forms.gle/kQRK7Ycvrpsyyew7A) | ||
|
||
## Topics | ||
|
||
This workshop is a fantastic opportunity to work on bioimage analysis using Nextflow, nf-core, and OME tools. We will cover a range of bioimage modalities, including: | ||
|
||
- **Light-sheet microscopy** | ||
- **MACSima/CODEX** | ||
- **MRI/CT scale imaging** | ||
|
||
The goal is to foster collaboration and exchange knowledge across the bioimage and Nextflow communities. | ||
|
||
## Schedule | ||
|
||
The event will be spread across two days, with a mix of presentations and practical sessions: | ||
|
||
<table class="table"> | ||
<tr> | ||
<th>Time</th> | ||
<th>Thursday, September 26th</th> | ||
<th>Friday, September 27th</th> | ||
</tr> | ||
<tr> | ||
<td>09:00</td> | ||
<td></td> | ||
<td>Presentations IV</td> | ||
</tr> | ||
<tr> | ||
<td>10:00</td> | ||
<td>Reception</td> | ||
<td rowspan="3" class="highlight">Hands-on Sessions</td> | ||
</tr> | ||
<tr> | ||
<td>11:00</td> | ||
<td>Event Opening</td> | ||
</tr> | ||
<tr> | ||
<td>11:15</td> | ||
<td>Presentations I</td> | ||
</tr> | ||
<tr> | ||
<td>12:15</td> | ||
<td>Lunch</td> | ||
<td>Lunch</td> | ||
</tr> | ||
<tr> | ||
<td>13:00</td> | ||
<td>Presentations II</td> | ||
<td>Presentations V</td> | ||
</tr> | ||
<tr> | ||
<td>14:00</td> | ||
<td>Break</td> | ||
<td>Break</td> | ||
</tr> | ||
<tr> | ||
<td>15:00</td> | ||
<td>Hands-on sessions</td> | ||
<td rowspan="2" class="highlight">Hands-on Sessions</td> | ||
</tr> | ||
<tr> | ||
<td>16:00</td> | ||
<td>Presentations III</td> | ||
</tr> | ||
<tr> | ||
<td>17:00</td> | ||
<td>Hands-on Sessions</td> | ||
<td>Closing Remarks</td> | ||
</tr> | ||
<tr> | ||
<td>18:00</td> | ||
<td>Get-together party</td> | ||
<td></td> | ||
</tr> | ||
</table> | ||
|
||
**Hands-on Sessions**: | ||
|
||
- Nextflow and nf-core | ||
- OME tools and standards (Bio-formats, OMERO, OME-Zarr) | ||
- Advanced tools for bioimage processing | ||
|
||
## Venue and virtual platform | ||
|
||
**Location**: | ||
Quantitative Biology Center (QBiC), University of Tübingen | ||
M3 Building, Otfried-Müller-Straße 37, 72076 Tübingen, Germany | ||
**Online Location**: [Gather Town](https://www.gather.town) | ||
|
||
## Contact | ||
|
||
For any inquiries, feel free to reach out: | ||
[luis.kuhn-cuellar@qbic.uni-tuebingen.de](mailto:luis.kuhn-cuellar@qbic.uni-tuebingen.de) |