Merge branch 'main' into dsc-kickoff

.github/ISSUE_TEMPLATE/guide-request.md

@@ -0,0 +1,11 @@
+---
+name: Guide request
+title: "[guide]"
+about: If you're missing a guide about a tool, software or concept, please let us know.
+labels: content
+---
+
+**Guide needed**
+*Please name and describe the guide you'd like to see with a few bullet points*
+
+:bulb: If you want to contribute a tutorial, please refer to the [contribution guide](https://nfdi4plants.org/nfdi4plants.knowledgebase/docs/CONTRIBUTING.html).

package.json

@@ -22,7 +22,7 @@
   },
   "homepage": "https://github.com/Freymaurer/nfdi4plants-fornax-template#readme",
   "dependencies": {
-    "@nfdi4plants/web-components": "^1.0.1",
+    "@nfdi4plants/web-components": "^1.1.0",
     "bulma": "^0.9.2"
   },
   "devDependencies": {

src/docs/ArcCommanderManual/arc_access.md

@@ -1,9 +1,11 @@
 ---
 layout: docs
 title: "DataHUB access for ARC synchronization"
-published: 2022-12-20
-author: Martin Kuhl
-author_github: martin-kuhl
+date: 2022-12-20
+author:
+- name: Martin Kuhl
+  github: https://github.com/Martin-Kuhl
+  orcid: https://orcid.org/0000-0002-8493-1077
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_branch.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Working on an ARC branch"
-published: 2022-12-13
+date: 2022-12-13
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_config.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Configure a git user locally for each ARC"
-published: 2022-12-20
+date: 2022-12-20
 add toc: true
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_connect.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Connect an ARC to the DataHUB"
-published: 2022-12-13
+date: 2022-12-13
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_export.md

@@ -1,9 +1,11 @@
 ---
 layout: docs
 title: "Export ARC metadata"
-published: 2022-12-20
-author: Martin Kuhl
-author_github: martin-kuhl
+date: 2022-12-20
+author:
+- name: Martin Kuhl
+  github: https://github.com/Martin-Kuhl
+  orcid: https://orcid.org/0000-0002-8493-1077
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_get.md

@@ -1,9 +1,11 @@
 ---
 layout: docs
 title: "Clone an ARC from the DataHUB"
-published: 2022-12-20
-author: Martin Kuhl
-author_github: martin-kuhl
+date: 2022-12-20
+author:
+- name: Martin Kuhl
+  github: https://github.com/Martin-Kuhl
+  orcid: https://orcid.org/0000-0002-8493-1077
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md
@@ -22,10 +24,3 @@ arc get -r https://github.com/nfdi4plants/ARC.git
 
 > :warning: In previous versions of the ARC Commander, the subcommand `get` allowed you to retrieve information from the ARC, e.g., `arc assay get` or `arc study person get`.  
 > This function is now available using the command `show`, e.g. `arc assay show` or `arc study person show`.
-
-<!-- TODO 
-
-Andrea: 
-Also, for arc get, the authentification problem might occur or re-occur when the access TOKEN is expired as somebody set it like this. Therefore, the respective link would be also of interest here.
-
- -->

src/docs/ArcCommanderManual/arc_initialization.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Initialize an ARC"
-published: 2022-12-13
+date: 2022-12-13
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_installation.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Installing the ARC Commander"
-published: 2022-12-20
+date: 2022-12-20
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_installation_dependencies.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Installing Dependencies"
-published: 2022-12-20
+date: 2022-12-20
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_installation_linux.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Installing the ARC Commander - Linux"
-published: 2022-12-20
+date: 2022-12-20
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md
@@ -41,4 +41,5 @@ You should see the following or similar message:
 > v0.4.0
 > Done processing command.  
 
-> :bulb: A global config file will be created the first time you use the ARC Commander in the folder `~/.config/DataPLANT/ArcCommander/`
+> :bulb: A global config file will be created the first time you use the ARC Commander at `~/.config/DataPLANT/ArcCommander/ArcCommander.config`
+

src/docs/ArcCommanderManual/arc_installation_macos.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Installing the ARC Commander - MacOS"
-published: 2022-12-20
+date: 2022-12-20
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md
@@ -53,4 +53,4 @@ You should see the following or similar message:
 > v0.4.0  
 > Done processing command.  
 
-> :bulb: A global config file will be created the first time you use the ARC Commander in the folder `~/.config/DataPLANT/ArcCommander/`
+> :bulb: A global config file will be created the first time you use the ARC Commander at `~/.config/DataPLANT/ArcCommander/ArcCommander.config`

src/docs/ArcCommanderManual/arc_installation_windows.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Installing the ARC Commander - Windows"
-published: 2022-12-20
+date: 2022-12-20
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_isa.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "ISA Metadata"
-published: 2022-12-13
+date: 2022-12-13
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_isa_assay.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Assay"
-published: 2022-12-13
+date: 2022-12-13
 add toc: true
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_isa_investigation.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Investigation"
-published: 2022-12-13
+date: 2022-12-13
 add toc: true
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_isa_study.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Study"
-published: 2022-12-13
+date: 2022-12-13
 add toc: true
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_synchronization.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Sychronize an ARC"
-published: 2022-12-13
+date: 2022-12-13
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/arc_update.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Update ISA metadata"
-published: 2022-12-21
+date: 2022-12-21
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/git_config.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "Configure a Git User"
-published: 2022-12-20
+date: 2022-12-20
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/index-setup.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: Setup
-published: 2023-06-13
+date: 2023-06-13
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md

src/docs/ArcCommanderManual/index.md

@@ -1,7 +1,7 @@
 ---
 layout: docs
 title: "ARC Commander Manual"
-published: 2022-12-13
+date: 2022-12-13
 add toc: false
 add support: false
 add sidebar: _sidebars/mainSidebar.md