Merge pull request #446 from akirbis/main

fixed more links

src/docs/ARCmanager-manual/03_view_ARCs.md

@@ -99,7 +99,7 @@ When you click on a file instead of a directory, another panel on the right side
 
 ---
 
-When selecting an ISA file, the editor panel will open as well, but instead of a text editor you will see a form that allows you to add metadata entries to the ISA file (Fig. 8). To learn more about adding metadata using the ARCmanager, visit the corresponding [Manual page](/docs/ARCmanager-manual/06_adding_metadata.html).
+When selecting an ISA file, the editor panel will open as well, but instead of a text editor you will see a form that allows you to add metadata entries to the ISA file (Fig. 8). To learn more about adding metadata using the ARCmanager, visit the corresponding [Manual page](./06_adding_metadata.html).
 
 ---
 

src/docs/ARCmanager-manual/04_create_ARCs.md

@@ -39,7 +39,7 @@ To create a new ARC in ARCmanager, follow the steps below:
 
     Click on the created project to explore it.
 
-4. The created ARC contains four folders: *studies*, *assays* , *workflows*, and *runs*.  To get familiar with these folders, visit the [Annotated Research Context knowledge base article](/docs/implementation/AnnotatedResearchContext.html).
+4. The created ARC contains four folders: *studies*, *assays* , *workflows*, and *runs*.  To get familiar with these folders, visit the [Annotated Research Context knowledge base article](./../implementation/AnnotatedResearchContext.html).
 
     <p float="center">
         <img src="../img/ARCmanager_createARCs_ARC_explore.png" width="500" align="center"  style="border: 1px solid  black;"/>

src/docs/ARCmanager-manual/06_adding_metadata.md

@@ -13,7 +13,7 @@ date: 2024-06-13
 
 Two different types of metadata are stored in ISA files: administrative and experimental metadata. Administrative metadata covers IDs, descriptions, contact details, connected publications and more, while experimental metadata is describing experimental procedures and similar processes. ISA files are normally stored in an Excel format (.xlsx) and need to adhere to the [ISA-XLSX specification](https://github.com/nfdi4plants/ARC-specification/blob/main/ISA-XLSX.md).
 
-A typical ISA file has the administrative metadata recorded in the first sheet of the Excel file (top-level metadata sheet). In addition, every _isa.study.xlsx_ and _isa.assay.xlsx_ file should have at least one more sheet where the experimental metadata is annotated (annotation table sheets), that is maintained through Swate. Both types of metadata can be edited with the ARCmanager. You can find more information about ISA file types and metadata sheets in the corresponding [knowledge base article](/docs/guides/isa_FileTypes.html) and the [ISA-XLSX specification](https://github.com/nfdi4plants/ARC-specification/blob/main/ISA-XLSX.md).
+A typical ISA file has the administrative metadata recorded in the first sheet of the Excel file (top-level metadata sheet). In addition, every _isa.study.xlsx_ and _isa.assay.xlsx_ file should have at least one more sheet where the experimental metadata is annotated (annotation table sheets), that is maintained through Swate. Both types of metadata can be edited with the ARCmanager. You can find more information about ISA file types and metadata sheets in the corresponding [knowledge base article](./../guides/isa_FileTypes.html) and the [ISA-XLSX specification](https://github.com/nfdi4plants/ARC-specification/blob/main/ISA-XLSX.md).
 
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