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Deploying to gh-pages from @ 31d08b7 🚀
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Brilator committed Aug 1, 2023
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Expand Up @@ -473,24 +473,12 @@ <h1 class="front-header">
<i class="help">
last updated at 2023-02-10
</i>
<ul>
<p>🚧 work in progress 🚧</p>
<ul>
<li><a href="#protocols---recipes-to-knowledge">Protocols - Recipes to Knowledge</a></li>
<li><a href="#eln---digital-protocol-editors">ELN - Digital Protocol Editors</a></li>
<li><a href="#arcs---packaging-eln-protocols-with-the-data">ARCs - Packaging ELN protocols with the data</a></li>
<li><a href="#actions-to-make-the-best-of-using-elns-with-arcs">Actions to make the best of using ELNs with ARCs</a>
<ul>
<li><a href="#structure-your-eln-un-mix-and-disentangle">Structure your ELN: un-mix and disentangle</a></li>
<li><a href="#review-protocol-habits">Review protocol habits</a>
<ul>
<li><a href="#cut-protocols-into-pieces">cut protocols into pieces</a></li>
</ul>
</li>
<li><a href="#identify-your-projects-and-resources">Identify your projects and resources</a></li>
<li><a href="#align-annotations">Align annotations</a></li>
<li><a href="#isa">ISA</a></li>
<li><a href="#export-protocols-to-arc">Export protocols to ARC</a></li>
</ul>
</li>
<li><a href="#actions-to-make-the-best-of-using-elns-with-arcs">Actions to make the best of using ELNs with ARCs</a></li>
<li><a href="#outlook">Outlook</a></li>
</ul>
<nfdi-h2 id="protocols-recipes-to-knowledge">Protocols - Recipes to Knowledge</nfdi-h2>
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<li>read-write isa.*.xlsx / isa.json</li>
</ul>
</li>
<li>create json templates in elabFTW</li>
<li>automated ARC-ELN synchronization</li>
<li>using isa templates in an ELN</li>
<li>integrate ontology API into ELN</li>
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- some routine, some continuously evolving
- some protocols form the base to very central experiments and assays
- Protocols are an integral part of publications (*materials and methods* section). Methods are shared with peers
1. classical pen-and-paper lab note book
5. classical pen-and-paper lab note book
1. metadata knowledge stuck in a single copy
2. hard to access (hidden in a shelf)
3. hard to maintain (over generations of researchers)
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