Mad scale (#347)

* Add mad_scale=5.0 to IF min/max parameters
niaid · Oct 6, 2023 · 899822c · 899822c
1 parent 600a35d
commit 899822c
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/em_workflows/brt/flow.py b/em_workflows/brt/flow.py
@@ -521,7 +521,7 @@ def gen_ng_metadata(fp_in: FilePath) -> Dict:
     ng_asset["metadata"] = {
         "shader": hw_image.shader_type,
         "dimensions": hw_image.dims,
-        "shaderParameters": hw_image.neuroglancer_shader_parameters(),
+        "shaderParameters": hw_image.neuroglancer_shader_parameters(mad_scale=5.0),
     }
     return ng_asset
 

diff --git a/em_workflows/czi/flow.py b/em_workflows/czi/flow.py
@@ -71,7 +71,7 @@ def gen_imageSet(file_path: FilePath) -> List:
             ng_asset["metadata"] = dict(
                 shader=image.shader_type,
                 dimensions="XY",
-                shaderParameters=image.neuroglancer_shader_parameters(),
+                shaderParameters=image.neuroglancer_shader_parameters(mad_scale=5.0),
             )
             assets.append(ng_asset)
         image_elt["assets"] = assets

diff --git a/em_workflows/sem_tomo/flow.py b/em_workflows/sem_tomo/flow.py
@@ -252,7 +252,7 @@ def gen_ng_metadata(fp_in: FilePath) -> Dict:
     ng_asset["metadata"] = dict(
         shader=hw_image.shader_type,
         dimensions=hw_image.dims,
-        shaderParameters=hw_image.neuroglancer_shader_parameters(),
+        shaderParameters=hw_image.neuroglancer_shader_parameters(mad_scale=5.0),
     )
     return ng_asset