Merge pull request #44 from andrewjpage/master

use same fasttree params in hybrid
nickjcroucher · Jul 10, 2012 · 129b6bf · 129b6bf
2 parents c97ba0b + 8cc61af
commit 129b6bf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/run_gubbins.py b/run_gubbins.py
@@ -233,7 +233,7 @@ def is_exe(fpath):
  if i == 1:
  previous_tree_name = fasttree_previous_tree_name(base_filename, i)
  current_tree_name = fasttree_current_tree_name(base_filename, i)
- tree_building_command = fasttree_tree_building_command(i, args.starting_tree,current_tree_name,base_filename,previous_tree_name,FASTTREE_EXEC,'-fastest' )
+ tree_building_command = fasttree_tree_building_command(i, args.starting_tree,current_tree_name,base_filename,previous_tree_name,FASTTREE_EXEC, FASTTREE_PARAMS )
  gubbins_command = fasttree_gubbins_command(base_filename,starting_base_filename+".gaps", i,args.alignment_filename,GUBBINS_EXEC,args.min_snps)
 
  elif i == 2: