Merge pull request #6 from andrewjpage/gubbins_overall_tests

send in most recent phylip file to raxml
nickjcroucher · Mar 19, 2012 · 78e92d1 · 78e92d1
2 parents c2fd261 + 274caf9
commit 78e92d1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/run_gubbins.pl b/run_gubbins.pl
@@ -48,7 +48,7 @@ =head1 METHODS
  $previous_tree = "-t $previous_tree_name";
  $base_filename = $previous_tree_name;
  }
- system("$tree_builder_exec -s $starting_base_filename.phylip -n $filename.$current_time.iteration_$i $previous_tree");
+ system("$tree_builder_exec -s $previous_tree_name.phylip -n $filename.$current_time.iteration_$i $previous_tree");
  system("$gubbins_exec -r $input_multi_fasta_alignment_file $starting_base_filename.vcf $current_tree $starting_base_filename.phylip");
 }