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update window creation #75

Merged
merged 9 commits into from
May 20, 2013
Merged

update window creation #75

merged 9 commits into from
May 20, 2013

Commits on May 13, 2013

  1. test files

    @andrewjpage
    andrewjpage committed May 13, 2013
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  2. calc likelihoods as doubles instead of ints

    @andrewjpage
    andrewjpage committed May 13, 2013
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  3. allocate memory for block likelihoods

    @andrewjpage
    andrewjpage committed May 13, 2013
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Commits on May 20, 2013

  1. cutoff with whole branch snps

    @andrewjpage
    andrewjpage committed May 20, 2013
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  2. new block finding method

    @andrewjpage
    andrewjpage committed May 20, 2013
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  3. create windows ignoring gaps

    @andrewjpage
    andrewjpage committed May 20, 2013
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  4. pass in length of original genome

    @andrewjpage
    andrewjpage committed May 20, 2013
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  5. iterate overblocks

    @andrewjpage
    andrewjpage committed May 20, 2013
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  6. centre sliding window

    @andrewjpage
    andrewjpage committed May 20, 2013
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