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RNAseq on Cavatica tutorial #316

Merged
merged 66 commits into from
Feb 24, 2021
Merged

RNAseq on Cavatica tutorial #316

merged 66 commits into from
Feb 24, 2021

Commits on Jan 29, 2021

  1. New RNAseq on cavatica tutorial 

    - added the tutorial to Bioinformatics index
- made some styling changes for the tutorial
- added some extra pymarkdown extensions
    @s-canchi
    s-canchi committed Jan 29, 2021
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  2. fixed right navigation render

    @s-canchi
    s-canchi committed Jan 29, 2021
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  3. fixed broken link

    @s-canchi
    s-canchi committed Jan 29, 2021
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  4. minor table formatting

    @s-canchi
    s-canchi committed Jan 29, 2021
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  5. removed instant nav

    @s-canchi
    s-canchi committed Jan 29, 2021
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  6. added pages and nav instant

    @s-canchi
    s-canchi committed Jan 29, 2021
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  7. Merge branch 'dev' into scanchi-rnaseq-new

    @s-canchi
    s-canchi authored Jan 29, 2021
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Commits on Feb 8, 2021

  1. marisa's fixes to the overview page

    @s-canchi
    s-canchi committed Feb 8, 2021
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  2. edits to intro to rnaseq lesson

    @s-canchi
    s-canchi committed Feb 8, 2021
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  3. fixed sentences, reorder, reformat and edits

    @s-canchi
    s-canchi committed Feb 8, 2021
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Commits on Feb 9, 2021

  1. punctuation and grammar checks

    @jeremywalter
    jeremywalter authored Feb 9, 2021
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  2. fixes to cavatica explore lesson, new screenshots, text edits, reformat

    @s-canchi
    s-canchi committed Feb 9, 2021
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  3. Merge branch 'scanchi-rnaseq-new' of https://github.com/nih-cfde/trai… 

    …ning-and-engagement into scanchi-rnaseq-new
    @s-canchi
    s-canchi committed Feb 9, 2021
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  4. fixed time scale on overview page

    @s-canchi
    s-canchi committed Feb 9, 2021
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  5. fixes to deseq setup lesson, new info on app versions, text edits and… 

    … reformat
    @s-canchi
    s-canchi committed Feb 9, 2021
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  6. minor grammar text edits

    @jeremywalter
    jeremywalter authored Feb 9, 2021
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  7. minor grammar fixes

    @jeremywalter
    jeremywalter authored Feb 9, 2021
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  8. highlighting file name

    @s-canchi
    s-canchi committed Feb 9, 2021
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  9. formatting symbols

    @s-canchi
    s-canchi committed Feb 9, 2021
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  10. updated with new screeshots, text edits, reformat and restructure in … 

    …data manipulation lesson
    @s-canchi
    s-canchi committed Feb 9, 2021
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  11. adding line break

    @s-canchi
    s-canchi committed Feb 9, 2021
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  12. reformat line breaks'

    @s-canchi
    s-canchi committed Feb 9, 2021
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  13. resize file image

    @s-canchi
    s-canchi committed Feb 9, 2021
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  14. redid excel images

    @s-canchi
    s-canchi committed Feb 9, 2021
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  15. added vidlet tip, reformat text in app lesson, minor txt corrections

    @s-canchi
    s-canchi committed Feb 9, 2021
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  16. Merge branch 'dev' into scanchi-rnaseq-new

    @s-canchi
    s-canchi authored Feb 9, 2021
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Commits on Feb 12, 2021

  1. updated data cruncher lesson, reformat, txt edits and corrections

    @s-canchi
    s-canchi committed Feb 12, 2021
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Commits on Feb 15, 2021

  1. Merge branch 'dev' into scanchi-rnaseq-new

    @s-canchi
    s-canchi authored Feb 15, 2021
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Commits on Feb 18, 2021

  1. fix landing pg table links

    @marisalim
    marisalim committed Feb 18, 2021
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  2. minor text, format edits. clarified some input steps, streamlined r s… 

    …cript download section
    @marisalim
    marisalim committed Feb 18, 2021
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Commits on Feb 19, 2021

  1. added commas and DGE to 1.md

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  2. RStudio word tweak 1.md

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  3. changes to tumor descriptions (grammatical) 2.md

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  4. missed a full-stop 2.md

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  5. add KF portal link 3.md

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  6. update rna_seq4.md - add more detailed selection directions

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  7. added some granularity to filtering steps 4.md

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  8. add tag name to instructions

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  9. grammar checks md.5

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  10. text changes and clarification

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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  11. more details for tumor filtering - add refresh mention

    @jeremywalter
    jeremywalter authored Feb 19, 2021
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Commits on Feb 21, 2021

  1. Merge branch 'dev' into scanchi-rnaseq-new

    @s-canchi
    s-canchi authored Feb 21, 2021
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Commits on Feb 22, 2021

  1. Added icons and reformat txt in lesson 4

    @s-canchi
    s-canchi committed Feb 22, 2021
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  2. added icons and minor text formatting in lesson 5

    @s-canchi
    s-canchi committed Feb 22, 2021
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  3. added icons to lesson 6

    @s-canchi
    s-canchi committed Feb 22, 2021
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  4. added icons and minor txt edits in lesson 7

    @s-canchi
    s-canchi committed Feb 22, 2021
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  5. added icons and minor text edits in lesson 8

    @s-canchi
    s-canchi committed Feb 22, 2021
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  6. Merge branch 'dev' into scanchi-rnaseq-new

    @s-canchi
    s-canchi authored Feb 22, 2021
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  7. added KF save link and note for cavatica login

    @s-canchi
    s-canchi committed Feb 22, 2021
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  8. edit link to kF save lesson

    @s-canchi
    s-canchi committed Feb 22, 2021
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Commits on Feb 23, 2021

  1. updated screenshots t match new query outcome and edit query link

    @s-canchi
    s-canchi committed Feb 23, 2021
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  2. minor txt correction

    @s-canchi
    s-canchi committed Feb 23, 2021
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  3. clarify excel use

    @s-canchi
    s-canchi committed Feb 23, 2021
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  4. Merge branch 'dev' into scanchi-rnaseq-new

    @s-canchi
    s-canchi authored Feb 23, 2021
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  5. text formatting and add histology_type selection

    @jeremywalter
    jeremywalter authored Feb 23, 2021
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  6. remove "" for tumor entry instructions

    @jeremywalter
    jeremywalter authored Feb 23, 2021
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  7. grammar and instructions fixes, added a time marker text

    @jeremywalter
    jeremywalter authored Feb 23, 2021
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  8. added some clarification for Steps 3, 3a, 3b

    @jeremywalter
    jeremywalter authored Feb 23, 2021
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  9. removed extensions to test render

    @s-canchi
    s-canchi committed Feb 23, 2021
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  10. removed unused extension

    @s-canchi
    s-canchi committed Feb 23, 2021
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Commits on Feb 24, 2021

  1. 8.md last fixes (fixing the step 3 fixes)

    @jeremywalter
    jeremywalter authored Feb 24, 2021
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  2. add an s

    @jeremywalter
    jeremywalter authored Feb 24, 2021
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  3. typos on RNAseq

    @marisalim
    marisalim committed Feb 24, 2021
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  4. Merge branch 'dev' into scanchi-rnaseq-new

    @marisalim
    marisalim authored Feb 24, 2021
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  5. clarify r script 3b instructions

    @marisalim
    marisalim committed Feb 24, 2021
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  6. final word tweaks, added ext back, added missing icons and end of les… 

    …son statements
    @s-canchi
    s-canchi committed Feb 24, 2021
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