Code

ENH: SDC integration#55

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Draft

eilidhmacnicol wants to merge 25 commits intonipreps:masternipreps/fmriprep-rodents:masterfrom eilidhmacnicol:enh/sdc_wfeilidhmacnicol/fmriprep-rodents:enh/sdc_wfCopy head branch name to clipboard

+952-880

Commits

Commits on May 11, 2023

• ci: add reusable anchors

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  8d49995

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• ci: restore cache paths for build and smoke test

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  6e056ca

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• ci: pull latest image from local registry for smoke test

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• ci: pull from docker registry in smoke test

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  c078d0c

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• wip: add sdc wf into base wf

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• wip: update bold wf with fieldmap info

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• fix: change registration to ants from fsl

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• fix: update init_anat_template_wf after smriprep bump

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• fix: duplicate node error

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• fix: task selection

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  be4bb48

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• WIP: base and functional wf overhaul

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• fix: sdcflow out_path_base to fmriprep dir

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  31cbf14

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• fix: surgery on sdcflows to scale images for topup and descale outputs

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• fix: add distorted ref to unwarp_wf

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• fix: improve coregistration parameters

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• wip: fixing sdcflows orientations

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• maint: update fmriplot compatibility to niworkflows 1.7.x

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• enh: scale min zooms to 1mm for topup

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• fix: bold native ref workflow connections

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• fix: generate final bold reference after resampling

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• pin: add sdcflows as dependency

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Commits on May 23, 2023

• pin: bump niworkflows to 1.8.x

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Commits on Jun 6, 2023

• pin: bump nirodents

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• fix: keep bold native resolution, not template

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• pin: bump smriprep

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