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Merge pull request #2465 from nipreps/docs/2385-regressors
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DOC: Better explanation on how spike regressors are generated
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oesteban authored Jul 21, 2021
2 parents 934f41b + 99e693f commit 1335120
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Expand Up @@ -299,10 +299,10 @@ including outlier points in the subsequent first-level analysis when building
the design matrix.
Averaged value of confound (for example, mean ``framewise_displacement``)
can also be added as regressors in group level analysis [Yan2013]_.
*Spike regressors* for outlier censoring can also be generated from within *fMRIPrep* using
the command line options ``--fd-spike-threshold`` and ``--dvars-spike-threshold``
(default: FD > 0.5 mm or DVARS > 1.5).
Spike regressors are stored in separate ``motion_outlier_XX`` columns.
*Regressors of motion spikes* for outlier censoring are generated from within *fMRIPrep*,
and their calculation may be adjusted with the command line options ``--fd-spike-threshold``
and ``--dvars-spike-threshold`` (defaults are FD > 0.5 mm or DVARS > 1.5).
Regressors of motion spikes are stored in separate ``motion_outlier_XX`` columns.

**Discrete cosine-basis regressors**.
Physiological and instrumental (scanner) noise sources are generally present in fMRI
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