chore(build): Install MSM via fslconda

nipreps · Dec 17, 2024 · 1ab0318 · 1ab0318
1 parent 152a80d
commit 1ab0318
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Showing 2 changed files with 1 addition and 4 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -242,10 +242,6 @@ ENV LANG="C.UTF-8" \
 ENV MKL_NUM_THREADS=1 \
     OMP_NUM_THREADS=1
 
-# MSM HOCR (Nov 19, 2019 release)
-RUN curl -L -H "Accept: application/octet-stream" https://api.github.com/repos/ecr05/MSM_HOCR/releases/assets/16253707 -o /usr/local/bin/msm \
-    && chmod +x /usr/local/bin/msm
-
 # Installing FMRIPREP
 COPY --from=src /src/dist/*.whl .
 RUN pip install --no-cache-dir $( ls *.whl )[container,test]

diff --git a/env.yml b/env.yml
@@ -35,6 +35,7 @@ dependencies:
   - fsl-fast4=2111.3
   - fsl-fugue=2201.4
   - fsl-mcflirt=2111.0
+  - fsl-msm=2008.0
   - fsl-miscmaths=2203.2
   - fsl-topup=2203.5
   - pip