Merge remote-tracking branch 'upstream/maint/20.2.x'

.circleci/config.yml

@@ -467,10 +467,11 @@ jobs:
       - store_artifacts:
           path: /tmp/ds005/derivatives
       - run:
-          name: Move intermediate results for second run
+          name: Copy intermediate results for re-runs
           command: |
             mkdir -p /tmp/${DATASET}/derivatives_partial
             sudo cp -a /tmp/${DATASET}/work /tmp/${DATASET}/work_partial
+            sudo cp -a /tmp/${DATASET}/work /tmp/${DATASET}/work_bids
             sudo rm -rf /tmp/${DATASET}/work_partial/fmriprep_wf/single_subject_01_wf/func_preproc_task_mixedgamblestask_run_02_wf/ica_aroma_wf
       - run:
           name: Checking outputs of full fMRIPrep run
@@ -483,6 +484,40 @@ jobs:
             find /tmp/${DATASET}/derivatives \( -path */figures -o -path */log \) -prune -o -name "*" -print | sed s+/tmp/${DATASET}/derivatives/++ | sort > /tmp/${DATASET}/test/outputs.out
             diff /tmp/src/fmriprep/.circleci/${CHECK_OUTPUTS_FILE} /tmp/${DATASET}/test/outputs.out
             exit $?
+      - run:
+          name: Prepare BIDS Derivatives dataset
+          command: |
+            mkdir -p /tmp/${DATASET}/bids/sourcedata
+            cp -r /tmp/${DATASET}/freesurfer /tmp/${DATASET}/bids/sourcedata/freesurfer
+      - run:
+          name: Re-run with BIDS layout
+          no_output_timeout: 2h
+          command: |
+            FASTRACK_ARG="--anat-derivatives /tmp/${DATASET}/smriprep-0.6"
+            if [ -f /tmp/.nofasttrack ]; then
+                FASTRACK_ARG=""
+            fi
+            fmriprep-docker -i nipreps/fmriprep:latest \
+                -e FMRIPREP_DEV 1 -u $(id -u) \
+                --network none \
+                --config $PWD/nipype.cfg -w /tmp/${DATASET}/work_bids \
+                /tmp/data/${DATASET}/ /tmp/${DATASET}/bids participant \
+                ${FASTRACK_ARG} \
+                --output-layout bids \
+                --sloppy --write-graph --use-syn-sdc --mem_mb 4096 \
+                --output-spaces MNI152NLin2009cAsym \
+                --nthreads 2 -vv
+      - run:
+          name: Checking outputs of partial fMRIPrep run
+          command: |
+            mkdir -p /tmp/${DATASET}/test
+            CHECK_OUTPUTS_FILE="${DATASET}_bids_fasttrack_outputs.txt"
+            if [ -f /tmp/.nofasttrack ]; then
+                CHECK_OUTPUTS_FILE="${DATASET}_bids_outputs.txt"
+            fi
+            find /tmp/${DATASET}/bids \( -path */figures -o -path */log \) -prune -o -name "*" -print | sed s+/tmp/${DATASET}/++ | grep -v sourcedata | sort > /tmp/${DATASET}/test/outputs.out
+            diff /tmp/src/fmriprep/.circleci/${CHECK_OUTPUTS_FILE} /tmp/${DATASET}/test/outputs.out
+            exit $?
       - run:
           name: Re-run fMRIPrep on single run of task data
           no_output_timeout: 2h

.circleci/ds005_bids_fasttrack_outputs.txt

@@ -0,0 +1,35 @@
+bids
+bids/.bidsignore
+bids/dataset_description.json
+bids/desc-aparcaseg_dseg.tsv
+bids/desc-aseg_dseg.tsv
+bids/logs
+bids/logs/CITATION.bib
+bids/logs/CITATION.html
+bids/logs/CITATION.md
+bids/logs/CITATION.tex
+bids/sub-01
+bids/sub-01/func
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-confounds_timeseries.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-confounds_timeseries.tsv
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-scanner_to-T1w_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-T1w_to-scanner_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_boldref.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-brain_mask.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-preproc_bold.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-confounds_timeseries.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-confounds_timeseries.tsv
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-scanner_to-T1w_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-T1w_to-scanner_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_boldref.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-brain_mask.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-preproc_bold.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
+bids/sub-01.html

.circleci/ds005_bids_outputs.txt

@@ -0,0 +1,66 @@
+bids
+bids/.bidsignore
+bids/dataset_description.json
+bids/desc-aparcaseg_dseg.tsv
+bids/desc-aseg_dseg.tsv
+bids/logs
+bids/logs/CITATION.bib
+bids/logs/CITATION.html
+bids/logs/CITATION.md
+bids/logs/CITATION.tex
+bids/sub-01
+bids/sub-01/anat
+bids/sub-01/anat/sub-01_desc-aparcaseg_dseg.nii.gz
+bids/sub-01/anat/sub-01_desc-aseg_dseg.nii.gz
+bids/sub-01/anat/sub-01_desc-brain_mask.json
+bids/sub-01/anat/sub-01_desc-brain_mask.nii.gz
+bids/sub-01/anat/sub-01_desc-preproc_T1w.json
+bids/sub-01/anat/sub-01_desc-preproc_T1w.nii.gz
+bids/sub-01/anat/sub-01_dseg.nii.gz
+bids/sub-01/anat/sub-01_from-fsnative_to-T1w_mode-image_xfm.txt
+bids/sub-01/anat/sub-01_from-MNI152NLin2009cAsym_to-T1w_mode-image_xfm.h5
+bids/sub-01/anat/sub-01_from-T1w_to-fsnative_mode-image_xfm.txt
+bids/sub-01/anat/sub-01_from-T1w_to-MNI152NLin2009cAsym_mode-image_xfm.h5
+bids/sub-01/anat/sub-01_hemi-L_inflated.surf.gii
+bids/sub-01/anat/sub-01_hemi-L_midthickness.surf.gii
+bids/sub-01/anat/sub-01_hemi-L_pial.surf.gii
+bids/sub-01/anat/sub-01_hemi-L_smoothwm.surf.gii
+bids/sub-01/anat/sub-01_hemi-R_inflated.surf.gii
+bids/sub-01/anat/sub-01_hemi-R_midthickness.surf.gii
+bids/sub-01/anat/sub-01_hemi-R_pial.surf.gii
+bids/sub-01/anat/sub-01_hemi-R_smoothwm.surf.gii
+bids/sub-01/anat/sub-01_label-CSF_probseg.nii.gz
+bids/sub-01/anat/sub-01_label-GM_probseg.nii.gz
+bids/sub-01/anat/sub-01_label-WM_probseg.nii.gz
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.json
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.json
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_dseg.nii.gz
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_label-CSF_probseg.nii.gz
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_label-GM_probseg.nii.gz
+bids/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_label-WM_probseg.nii.gz
+bids/sub-01/func
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-confounds_timeseries.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-confounds_timeseries.tsv
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-scanner_to-T1w_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-T1w_to-scanner_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_boldref.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-brain_mask.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-preproc_bold.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-confounds_timeseries.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-confounds_timeseries.tsv
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-scanner_to-T1w_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-T1w_to-scanner_mode-image_xfm.txt
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_boldref.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-brain_mask.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-preproc_bold.json
+bids/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz
+bids/sub-01.html

.circleci/ds005_fasttrack_outputs.txt

@@ -17,11 +17,16 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-MELODIC_mixing.tsv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-scanner_to-T1w_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-T1w_to-scanner_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.dtseries.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.dtseries.nii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
@@ -36,6 +41,7 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_de
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-preproc_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-preproc_bold.nii.gz
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-T1w_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-T1w_desc-aparcaseg_dseg.nii.gz
@@ -51,11 +57,16 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-MELODIC_mixing.tsv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-scanner_to-T1w_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-T1w_to-scanner_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsLR_den-91k_bold.dtseries.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsLR_den-91k_bold.dtseries.nii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsLR_den-91k_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
@@ -70,6 +81,7 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_de
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-preproc_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-preproc_bold.nii.gz
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-T1w_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-T1w_desc-aparcaseg_dseg.nii.gz

.circleci/ds005_outputs.txt

@@ -58,11 +58,16 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-MELODIC_mixing.tsv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-scanner_to-T1w_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_from-T1w_to-scanner_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsaverage5_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.dtseries.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.dtseries.nii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsLR_den-91k_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-fsnative_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
@@ -77,6 +82,7 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_de
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-preproc_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-preproc_bold.nii.gz
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-T1w_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-T1w_desc-aparcaseg_dseg.nii.gz
@@ -92,11 +98,16 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-MELODIC_mixing.tsv
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-scanner_to-T1w_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_from-T1w_to-scanner_mode-image_xfm.txt
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsaverage5_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsLR_den-91k_bold.dtseries.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsLR_den-91k_bold.dtseries.nii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsLR_den-91k_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-L_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-L_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-R_bold.func.gii
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-fsnative_hemi-R_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aparcaseg_dseg.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-aseg_dseg.nii.gz
@@ -111,6 +122,7 @@ fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_de
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-brain_mask.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-preproc_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-preproc_bold.nii.gz
+fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.json
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin6Asym_desc-smoothAROMAnonaggr_bold.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-T1w_boldref.nii.gz
 fmriprep/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-T1w_desc-aparcaseg_dseg.nii.gz