Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

chore(build): Install Workbench CLI via conda #3410

Merged
merged 1 commit into from
Dec 17, 2024

Conversation

effigies
Copy link
Member

I got connectome-workbench onto conda-forge: https://github.com/conda-forge/connectome-workbench-split-feedstock

It has a connectome-workbench-cli package that excludes the GUI, and now this is one fewer things to have special in the Dockerfile.

@effigies effigies force-pushed the build/workbench-conda branch from 4a89f5f to 90a8b72 Compare December 11, 2024 19:21
@effigies
Copy link
Member Author

Ugh, incompatible libzlib (1.3.x) with flirt (1.2.x). I think zlib is supposed to have a stable ABI, so I'm going to see if I can build and use it. Otherwise I could compile with zlib variants and push multiple variants to conda-forge.

@effigies effigies force-pushed the build/workbench-conda branch from 90a8b72 to e8a1072 Compare December 17, 2024 13:06
@effigies effigies marked this pull request as ready for review December 17, 2024 13:49
Copy link

codecov bot commented Dec 17, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 72.32%. Comparing base (152a80d) to head (a0d44bf).
Report is 6 commits behind head on master.

Additional details and impacted files
@@           Coverage Diff           @@
##           master    #3410   +/-   ##
=======================================
  Coverage   72.32%   72.32%           
=======================================
  Files          57       57           
  Lines        4267     4267           
  Branches      545      545           
=======================================
  Hits         3086     3086           
- Misses       1061     1065    +4     
+ Partials      120      116    -4     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@effigies effigies force-pushed the build/workbench-conda branch from e8a1072 to a0d44bf Compare December 17, 2024 16:40
@effigies effigies merged commit cf360a3 into nipreps:master Dec 17, 2024
19 checks passed
@effigies effigies deleted the build/workbench-conda branch December 17, 2024 17:40
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants