FIX: Skip version cache on read-only filesystems

[effigies]

Fixes #853.

Following nipreps/fmriprep#1830.

[pep8speaks]

Hello @effigies, Thank you for updating!

Cheers! There are no style issues detected in this Pull Request. 🍻 To test for issues locally, pip install flake8 and then run flake8 niworkflows.

Comment last updated at 2020-12-16 19:03:33 UTC

[effigies]

Travis failures are #863. Will not include fix in this PR.

[effigies]

@oesteban There are Bad Gateway errors in the CircleCI tests. URLs aren't exposed, so I don't know what service it's trying to access.

cc @rwblair in case you know and can restart a service.

[rwblair]

Looks like its running its own version of the webapi locally:
https://github.com/poldracklab/mriqc/blob/5898396026817ce114bbc90bac0dd5d7c48618e0/.circleci/config.yml#L468

Guess I'll rerun job with ssh and inspect nginx logs to see what I can see.

[effigies]

Did we ever figure this out?

[effigies]

SSHing in, I see:

$ docker logs dockereve-master_eve_1
[2020-12-13 23:42:24 +0000] [1] [INFO] Starting gunicorn 20.0.4
[2020-12-13 23:42:24 +0000] [1] [INFO] Listening at: http://0.0.0.0:5000 (1)
[2020-12-13 23:42:24 +0000] [1] [INFO] Using worker: sync
[2020-12-13 23:42:24 +0000] [8] [INFO] Booting worker with pid: 8
[2020-12-13 23:42:24 +0000] [9] [INFO] Booting worker with pid: 9
[2020-12-13 23:42:25 +0000] [8] [ERROR] Exception in worker process
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/gunicorn/arbiter.py", line 583, in spawn_worker
    worker.init_process()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/workers/base.py", line 119, in init_process
    self.load_wsgi()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/workers/base.py", line 144, in load_wsgi
    self.wsgi = self.app.wsgi()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/app/base.py", line 67, in wsgi
    self.callable = self.load()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/app/wsgiapp.py", line 49, in load
    return self.load_wsgiapp()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/app/wsgiapp.py", line 39, in load_wsgiapp
    return util.import_app(self.app_uri)
  File "/usr/local/lib/python3.6/site-packages/gunicorn/util.py", line 358, in import_app
    mod = importlib.import_module(module)
  File "/usr/local/lib/python3.6/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 994, in _gcd_import
  File "<frozen importlib._bootstrap>", line 971, in _find_and_load
  File "<frozen importlib._bootstrap>", line 955, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 678, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/usr/src/app/app.py", line 21, in <module>
    app.register_blueprint(swagger, url_prefix='/docs/api')
  File "/usr/local/lib/python3.6/site-packages/flask/app.py", line 98, in wrapper_func
    return f(self, *args, **kwargs)
  File "/usr/local/lib/python3.6/site-packages/flask/app.py", line 1156, in register_blueprint
    if blueprint.name in self.blueprints:
AttributeError: module 'eve_swagger.swagger' has no attribute 'name'
[2020-12-13 23:42:25 +0000] [8] [INFO] Worker exiting (pid: 8)
[2020-12-13 23:42:25 +0000] [9] [ERROR] Exception in worker process
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/gunicorn/arbiter.py", line 583, in spawn_worker
    worker.init_process()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/workers/base.py", line 119, in init_process
    self.load_wsgi()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/workers/base.py", line 144, in load_wsgi
    self.wsgi = self.app.wsgi()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/app/base.py", line 67, in wsgi
    self.callable = self.load()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/app/wsgiapp.py", line 49, in load
    return self.load_wsgiapp()
  File "/usr/local/lib/python3.6/site-packages/gunicorn/app/wsgiapp.py", line 39, in load_wsgiapp
    return util.import_app(self.app_uri)
  File "/usr/local/lib/python3.6/site-packages/gunicorn/util.py", line 358, in import_app
    mod = importlib.import_module(module)
  File "/usr/local/lib/python3.6/importlib/__init__.py", line 126, in import_module
    return _bootstrap._gcd_import(name[level:], package, level)
  File "<frozen importlib._bootstrap>", line 994, in _gcd_import
  File "<frozen importlib._bootstrap>", line 971, in _find_and_load
  File "<frozen importlib._bootstrap>", line 955, in _find_and_load_unlocked
  File "<frozen importlib._bootstrap>", line 665, in _load_unlocked
  File "<frozen importlib._bootstrap_external>", line 678, in exec_module
  File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
  File "/usr/src/app/app.py", line 21, in <module>
    app.register_blueprint(swagger, url_prefix='/docs/api')
  File "/usr/local/lib/python3.6/site-packages/flask/app.py", line 98, in wrapper_func
    return f(self, *args, **kwargs)
  File "/usr/local/lib/python3.6/site-packages/flask/app.py", line 1156, in register_blueprint
    if blueprint.name in self.blueprints:
AttributeError: module 'eve_swagger.swagger' has no attribute 'name'
[2020-12-13 23:42:25 +0000] [9] [INFO] Worker exiting (pid: 9)
[2020-12-13 23:42:25 +0000] [1] [INFO] Shutting down: Master
[2020-12-13 23:42:25 +0000] [1] [INFO] Reason: Worker failed to boot.

(Message repeats...)

Did some digging, and came up with nipreps/mriqcwebapi#47.

Testing that here.

[effigies]

IQM issue. @oesteban if you could have a look? Or anybody else qualified to look through Circle?

[oesteban]

Could you rebase?

[effigies]

Tests passing and I got an in-principle approval a while back, so I'll go ahead and merge.

I would suggest a release soonish since a lot of these issues are long-standing, though we might also need to release mriqcwebapi. I don't know if there are deployment issues there?

[yarikoptic]

note to myself -- slated for 0.15.3 or 0.16 whatever comes first, right? ;)

[oesteban]

I don't know if there are deployment issues there?

You bet, but maybe the webapi wants to give us a nice surprise. @rwblair may actually know better than myself

[effigies]

0.15.3 is out already. I would suggest 0.16, just to mark that it took some work and upgraders may need to consider dependencies.

[yarikoptic]

https://github.com/poldracklab/mriqc/ says latest release 0.15.2

[effigies]

There's a tag that didn't get an official release page. If you click in the releases, you'll see it.