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Rodent T2w preprocessing: calculate T2w template and validate headers #1

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oesteban opened this issue May 6, 2019 · 1 comment
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Rodent T2w preprocessing: calculate T2w template and validate headers #1

oesteban opened this issue May 6, 2019 · 1 comment
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@eilidhmacnicol

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oesteban commented May 6, 2019

Based on https://github.com/poldracklab/smriprep/blob/4f79b71e5527a1b4c6844e8508996386b26b75f0/smriprep/workflows/anatomical.py#L38-L381, set up a workflow for rodent MRI that:

  • Calculates a T2w template if several images are given
@oesteban oesteban transferred this issue from nipreps/smriprep Feb 7, 2020
@oesteban oesteban assigned eilidhmacnicol and unassigned rciric Feb 7, 2020
This was referenced Feb 7, 2020
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It seems we'll carry on with WHS. Closing this.

eilidhmacnicol pushed a commit to eilidhmacnicol/nirodents that referenced this issue Sep 18, 2020
@oesteban
Merge pull request nipreps#1 from eilidhmacnicol/enh/reports_cli_patch
443b284 
enh: add cli args
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