Merge tag '1.0.6'

1.0.6 (April 15, 2020) Bug-fix release. * FIX: Do not reorient magnitude images (#98)
nipreps · Apr 16, 2020 · fe0f88a · fe0f88a
2 parents 95ad0f0 + 67138a4
commit fe0f88a
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diff --git a/CHANGES.rst b/CHANGES.rst
@@ -1,9 +1,15 @@
+1.0.6 (April 15, 2020)
+======================
+Bug-fix release.
+
+* FIX: Do not reorient magnitude images (#98)
+
 1.2.1 (April 01, 2020)
 ======================
 A patch release to make *SDCFlows* more amicable to downstream software.
 
-  * MAINT: Migrate from versioneer to setuptools_scm (#97)
-  * MAINT: Flexibilize dependencies -- nipype, niworkflows, pybids (#95)
+* MAINT: Migrate from versioneer to setuptools_scm (#97)
+* MAINT: Flexibilize dependencies -- nipype, niworkflows, pybids (#95)
 
 1.2.0 (February 15, 2020)
 =========================

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -8,7 +8,7 @@ packaging
 pydot>=1.2.3
 pydotplus
 sphinx-argparse
-sphinx>=2.1.2
+sphinx>=2.1.2,<3
 sphinx_rtd_theme
 sphinxcontrib-apidoc ~= 0.3.0
-templateflow
+templateflow
diff --git a/sdcflows/workflows/gre.py b/sdcflows/workflows/gre.py
@@ -65,7 +65,8 @@ def init_magnitude_wf(omp_nthreads, name='magnitude_wf'):
         name='outputnode')
 
     # Merge input magnitude images
-    magmrg = pe.Node(IntraModalMerge(hmc=False), name='magmrg')
+    # Do not reorient to RAS to preserve the validity of PhaseEncodingDirection
+    magmrg = pe.Node(IntraModalMerge(hmc=False, to_ras=False), name='magmrg')
 
     # de-gradient the fields ("bias/illumination artifact")
     n4_correct = pe.Node(ants.N4BiasFieldCorrection(dimension=3, copy_header=True),

diff --git a/setup.cfg b/setup.cfg
@@ -45,7 +45,7 @@ include_package_data = True
 
 [options.extras_require]
 doc =
-    sphinx >= 2.1.2
+    sphinx >= 2.1.2, <3
     pydot >= 1.2.3
     pydotplus
     sphinx_rtd_theme