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Repair 3dQwarp workflow #454

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Repair 3dQwarp workflow #454

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19677a1
Repair 3dQwarp workflow
psadil Jul 7, 2024
dc296de
Lint
psadil Jul 7, 2024
d7f58a5
More linting
psadil Jul 7, 2024
f8f601c
Add missing fsl dependency for testing
psadil Jul 7, 2024
afc1a7d
Add fsl-beet2 to env.yml for docker
psadil Jul 7, 2024
48ad74c
Keep 3dQwarp in docker image
psadil Jul 7, 2024
1a11859
Allow getting trt when TotalReadoutTime not in metadata
psadil Jul 8, 2024
7b72302
Add informative error when TotalReadoutTime not in metadata and in_fi…
psadil Jul 8, 2024
dd5f251
Improve test coverage
psadil Jul 8, 2024
9b40a9d
Improve exception
psadil Oct 16, 2024
923ab4a
manually undo accidental linting
psadil Oct 16, 2024
d66c86e
Update sdcflows/utils/tests/test_epimanip.py
psadil Oct 16, 2024
0275bb2
manually undo accidental linting
psadil Oct 16, 2024
166be74
manually undo accidental linting
psadil Oct 16, 2024
ac5f87a
more accidental linting
psadil Oct 17, 2024
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More linting
@psadil
psadil committed Jul 7, 2024

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Learn about vigilant mode
commit d7f58a5687272ef993384e31c3d5c8479b1f52f6
4 changes: 2 additions & 2 deletions sdcflows/workflows/fit/tests/test_pepolar.py
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Original file line number Diff line number Diff line change
@@ -78,8 +78,8 @@ def test_pepolar_wf(tmpdir, bids_layouts, workdir, outdir, ds, workflow):
# fmt: off
wf.connect([
(pepolar_wf, fmap_reports_wf, [("outputnode.fmap", "inputnode.fieldmap"),
("outputnode.fmap_ref", "inputnode.fmap_ref"),
("outputnode.fmap_mask", "inputnode.fmap_mask")]),
("outputnode.fmap_ref", "inputnode.fmap_ref"),
("outputnode.fmap_mask", "inputnode.fmap_mask")]),
(pepolar_wf, fmap_derivatives_wf, [
("outputnode.fmap", "inputnode.fieldmap"),
("outputnode.fmap_ref", "inputnode.fmap_ref"),