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tillea opened this issue Jan 27, 2023 · 0 comments · Fixed by #3538
Closed

Build failure with nibabel 5.0 #3537

tillea opened this issue Jan 27, 2023 · 0 comments · Fixed by #3538

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@tillea
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tillea commented Jan 27, 2023

Summary

The Debian package of nipype has errors in build time test since nibabel 5.0 was uploaded.

Actual behavior

There is a build log showing the errors (including all used preconditions and versions). Here is the short test summary info:

=========================== short test summary info ============================
FAILED ../nipype/algorithms/tests/test_ErrorMap.py::test_errormap - ValueError: Image data has type int64, which may cause incompatibilities with other tools. To use this type, pass an explicit header or dtype argument to Nifti1Image().
FAILED ../nipype/algorithms/tests/test_metrics.py::test_fuzzy_overlap - ValueError: Image data has type int64, which may cause incompatibilities with other tools. To use this type, pass an explicit header or dtype argument to Nifti1Image().
ERROR ../nipype/algorithms/tests/test_TSNR.py::TestTSNR::test_tsnr - ValueError: Image data has type int64, which may cause incompatibilities with other tools. To use this type, pass an explicit header or dtype argument to Nifti1Image().
ERROR ../nipype/algorithms/tests/test_TSNR.py::TestTSNR::test_tsnr_withpoly1 - ValueError: Image data has type int64, which may cause incompatibilities with other tools. To use this type, pass an explicit header or dtype argument to Nifti1Image().
ERROR ../nipype/algorithms/tests/test_TSNR.py::TestTSNR::test_tsnr_withpoly2 - ValueError: Image data has type int64, which may cause incompatibilities with other tools. To use this type, pass an explicit header or dtype argument to Nifti1Image().
ERROR ../nipype/algorithms/tests/test_TSNR.py::TestTSNR::test_tsnr_withpoly3 - ValueError: Image data has type int64, which may cause incompatibilities with other tools. To use this type, pass an explicit header or dtype argument to Nifti1Image().
ERROR ../nipype/algorithms/tests/test_TSNR.py::TestTSNR::test_warning - ValueError: Image data has type int64, which may cause incompatibilities with other tools. To use this type, pass an explicit header or dtype argument to Nifti1Image().
= 2 failed, 2718 passed, 243 skipped, 1 deselected, 5 xfailed, 229 warnings, 5 errors in 163.84s (0:02:43) =

Expected behavior

Passing all tests also with nibabel 5.0

How to replicate the behavior

Please verify the latest version of nibabel to build nipype.

Platform details:

OS: Debian sid
You can find all information about Python version and nipype version in the full build log

Kind regards, Andreas.

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