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trait changes in RealignInputSpec (fixes #2120) #2350

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trait changes in RealignInputSpec (fixes #2120) #2350

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166f9f5
changing in_files in RealignInputSpec
djarecka Dec 29, 2017
2f490b5
after make check-before-commit
djarecka Dec 29, 2017
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2 changes: 1 addition & 1 deletion doc/users/config_file.rst
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Original file line number Diff line number Diff line change
Expand Up @@ -170,7 +170,7 @@ Resource Monitor
Indicates where the summary file collecting all profiling information from the
resource monitor should be stored after execution of a workflow.
The ``summary_file`` does not apply to interfaces run independently.
(unset by default, in which case the summary file will be written out to
(unset by default, in which case the summary file will be written out to
``<base_dir>/resource_monitor.json`` of the top-level workflow).

*summary_append*
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4 changes: 2 additions & 2 deletions doc/users/plugins.rst
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Expand Up @@ -82,9 +82,9 @@ Optional arguments::
exceed the total amount of resources available (memory and threads), when
``False`` (default), only a warning will be issued.

maxtasksperchild : number of nodes to run on each process before refreshing
maxtasksperchild : number of nodes to run on each process before refreshing
the worker (default: 10).


To distribute processing on a multicore machine, simply call::

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157 changes: 0 additions & 157 deletions nipype/interfaces/ants/tests/test_auto_Registration.py
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61 changes: 0 additions & 61 deletions nipype/interfaces/niftyseg/tests/test_auto_PatchMatch.py
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8 changes: 3 additions & 5 deletions nipype/interfaces/spm/preprocess.py
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Expand Up @@ -119,11 +119,9 @@ def _list_outputs(self):


class RealignInputSpec(SPMCommandInputSpec):
in_files = InputMultiPath(traits.Either(traits.List(
ImageFileSPM(exists=True)),
ImageFileSPM(exists=True)), field='data',
mandatory=True, copyfile=True,
desc='list of filenames to realign')
in_files = InputMultiPath(ImageFileSPM(exists=True),
field='data', desc='list of files to realign',
mandatory=True, copyfile=False)
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Copyfile=True?

jobtype = traits.Enum('estwrite', 'estimate', 'write',
desc='one of: estimate, write, estwrite',
usedefault=True)
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2 changes: 1 addition & 1 deletion nipype/interfaces/spm/tests/test_auto_Realign.py
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Expand Up @@ -10,7 +10,7 @@ def test_Realign_inputs():
nohash=True,
usedefault=True,
),
in_files=dict(copyfile=True,
in_files=dict(copyfile=False,
field='data',
mandatory=True,
),
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