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ENH: Read (and apply) ITK/ANTs' composite HDF5 transforms #79

Merged
merged 5 commits into from
Mar 26, 2020
Merged

ENH: Read (and apply) ITK/ANTs' composite HDF5 transforms #79

merged 5 commits into from
Mar 26, 2020

Commits on Mar 25, 2020

  1. feat(io.reader): draft implementation of ITK/ANTs' composite HDF5 tra… 

    …nsforms

Uses ``h5py`` to browse the transforms group, and concatenates them in a list
ready for nitransforms' wrapping into a ``TransformsChain``.

The writer is not included in this PR.

The implementation takes into account the misspelling of "Tranforms" present
in transforms generated with older versions of ITK.

This implementation only accepts the composite transforms generated by ANTs.

Resolves: nipy#4
    @oesteban
    oesteban committed Mar 25, 2020
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  2. feat: add test reading a real h5 generated by ANTs

    @oesteban
    oesteban committed Mar 25, 2020
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  3. test: cover one more line of code with a test

    @oesteban
    oesteban committed Mar 25, 2020
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Commits on Mar 26, 2020

  1. feat: split transform chains out from base and add a load function 

    This was necessary to integrate one test equivalent to resampling with
``antsApplyTransforms``, but via nitransforms.
    @oesteban
    oesteban committed Mar 26, 2020
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  2. Update nitransforms/tests/test_manip.py 

    Co-Authored-By: Mathias Goncalves <goncalves.mathias@gmail.com>
    @oesteban @mgxd
    oesteban and mgxd authored Mar 26, 2020
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