Merge pull request #401 from kevm29/patch-1

Update split_reads.py
nservant · Feb 1, 2021 · 84eb7f1 · 84eb7f1
2 parents c0198d7 + 01a14bd
commit 84eb7f1
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/utils/split_reads.py b/bin/utils/split_reads.py
@@ -25,7 +25,7 @@
 
 if filename.endswith('.gz'):
     prefix = re.sub('((.fastq)|(.fq)).gz','_part', os.path.join(out, os.path.basename(filename)))
-    cmd = "zcat {} | split -l {} -d - {}".format(
+    cmd = "zcat -fc {} | split -l {} -d - {}".format(
         filename, nlines, prefix)
 else:
     prefix = re.sub('(.fastq)|(.fq)','_part', os.path.join(out, os.path.basename(filename)))