fix bug issue #134

nservant · Mar 12, 2018 · c792d2b · c792d2b
1 parent 07ccb16
commit c792d2b
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diff --git a/NEWS b/NEWS
@@ -7,6 +7,8 @@ SIGNIFICANT USER-VISIBLE CHANGES
 
 BUG FIXES
 
+   o Fix bug in mapped_2hic_fragments.py (issue #134)
+
    o Fix shebang in make_viewpoints.py
 
 ***********************************

diff --git a/scripts/mapped_2hic_fragments.py b/scripts/mapped_2hic_fragments.py
@@ -111,7 +111,7 @@ def get_cis_dist(read1, read2):
      # Get oriented reads
      ##r1, r2 = get_ordered_reads(read1, read2)
      dist = None
-     if not r1.is_unmapped and not r2.is_unmapped:         
+     if not read1.is_unmapped and not read2.is_unmapped:         
          ## Contact distances can be calculated for intrachromosomal reads only
          if isIntraChrom(read1, read2):
              r1pos = get_read_pos(read1)