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@nuno-agostinho nuno-agostinho released this 04 Nov 17:44
1.0.1
ecb24eb
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Learn about vigilant mode.
  • Update title, author names, version and README
  • Remove biomaRt dependency
  • By default, getL1000conditions now shows CMap perturbation types except for controls
  • Compare against CMap perturbations (compareAgainstL1000 function):
    • Remove "_t" from resulting column names (as the t-statistic may or may not be used)
    • Select p-value adjustment method when performing correlation analyses (Benjamini-Hochberg is set by default)
  • Documentation:
    • Fix obsolete function calls in function documentation
    • Hide non-exported functions from reference PDF manual
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