Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Adresses #2179 NTR lactocyte subtypes #2189

Merged
merged 5 commits into from
Oct 17, 2023
Merged

Adresses #2179 NTR lactocyte subtypes #2189

Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
b687bb9
Adresses #2179 NTR lactocyte subtypes
aleixpuigb Oct 16, 2023
ce3c639
Corrected dbxref for progenitor MEC
aleixpuigb Oct 16, 2023
98fe9e5
Corrected synonym type
aleixpuigb Oct 16, 2023
3fc59f2
Remove uncertain sentence
aleixpuigb Oct 16, 2023
4e50d42
Merge branch 'master' into 2179_NTR_lactocytes
aleixpuigb Oct 17, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
27 changes: 27 additions & 0 deletions src/ontology/cl-edit.owl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -3004,6 +3004,8 @@ Declaration(Class(obo:CL_4033053))
Declaration(Class(obo:CL_4033054))
Declaration(Class(obo:CL_4033055))
Declaration(Class(obo:CL_4033056))
Declaration(Class(obo:CL_4033059))
Declaration(Class(obo:CL_4033060))
Declaration(Class(obo:CL_4040000))
Declaration(Class(obo:CL_4040001))
Declaration(Class(obo:CL_4040002))
Expand Down Expand Up @@ -31696,6 +31698,31 @@ AnnotationAssertion(rdfs:label obo:CL_4033056 "onychocyte")
SubClassOf(obo:CL_4033056 obo:CL_0000312)
SubClassOf(obo:CL_4033056 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008198))
aleixpuigb marked this conversation as resolved.
Show resolved Hide resolved

# Class: obo:CL_4033059 (lactocyte type 1)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") Annotation(oboInOwl:hasDbXref "PMID:35377806") obo:IAO_0000115 obo:CL_4033059 "A lactocyte that highly expresses genes associated with transcription, immune cell function, and cellular stress. A lactocyte type 1 also expresses genes involved in milk component biosynthesis (e.g., LALBA and CSNs), albeit at lower levels than a lactocyte type 2.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033059 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033059 <https://orcid.org/0000-0003-4361-817X>)
aleixpuigb marked this conversation as resolved.
Show resolved Hide resolved
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4033059 "2023-10-16T13:15:36Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:34097179") oboInOwl:hasBroadSynonym obo:CL_4033059 "luminal cluster 1 cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033059 "LC1")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") oboInOwl:hasRelatedSynonym obo:CL_4033059 "LMC major luminal cluster 1")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033059 "progenitor MEC")
AnnotationAssertion(rdfs:label obo:CL_4033059 "lactocyte type 1")
aleixpuigb marked this conversation as resolved.
Show resolved Hide resolved
SubClassOf(obo:CL_4033059 obo:CL_0002325)

# Class: obo:CL_4033060 (lactocyte type 2)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") Annotation(oboInOwl:hasDbXref "PMID:35377806") obo:IAO_0000115 obo:CL_4033060 "A lactocyte that highly expresses genes associated with lipid production and milk component biosynthesis.")
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033060 <https://orcid.org/0000-0001-6677-8489>)
AnnotationAssertion(<http://purl.org/dc/terms/contributor> obo:CL_4033060 <https://orcid.org/0000-0003-4361-817X>)
AnnotationAssertion(<http://purl.org/dc/terms/date> obo:CL_4033060 "2023-10-16T13:15:55Z"^^xsd:dateTime)
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35377806") oboInOwl:hasBroadSynonym obo:CL_4033060 "luminal cluster 2 cell")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") Annotation(oboInOwl:hasSynonymType obo:OMO_0003000) oboInOwl:hasRelatedSynonym obo:CL_4033060 "LC2")
AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:35091553") oboInOwl:hasRelatedSynonym obo:CL_4033060 "LMC major luminal cluster 2")
AnnotationAssertion(rdfs:label obo:CL_4033060 "lactocyte type 2")
SubClassOf(obo:CL_4033060 obo:CL_0002325)

# Class: obo:CL_4040000 (glial restricted tripotential precursor cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:10719353") obo:IAO_0000115 obo:CL_4040000 "A glial precursor cell that generates oligodendrocytes and type-1 and type-2 astrocytes. It has been shown in some mammals that this cell type may express A2B5, nestin, FGFR-1, FGFR-2, FGFR-3, PLP, and DM-20 antigens. Unlike oligodendrocyte precursor cell, it does not initially express PDGFR-alpha and can differentiate into both type-1 and type-2 astrocytes.")
Expand Down