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Gut images #2766

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Gut images #2766

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6b85350
Create README.md
JABelfiore Nov 15, 2024
6cf7ba6
Layers of the GI tract image
JABelfiore Nov 15, 2024
07c5cda
SI Zhu 2021
JABelfiore Nov 15, 2024
498a8b4
test 1
JABelfiore Nov 15, 2024
b66a4f2
Merge branch 'gut_images_2' of https://github.com/obophenotype/cell-o…
JABelfiore Nov 15, 2024
02ae7cc
Colon SI layers
JABelfiore Nov 22, 2024
c5b9063
Merge branch 'master' into gut_images_2
dosumis Nov 25, 2024
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1 change: 1 addition & 0 deletions images/README.md
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This folder is for hosting images for linking to Cl terms
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30 changes: 15 additions & 15 deletions src/ontology/cl-edit.owl
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Expand Up @@ -3372,7 +3372,7 @@ AnnotationAssertion(rdfs:label obo:IAO_0000115 "definition")

AnnotationAssertion(rdfs:label obo:IAO_0000424 "expand expression to")

# Annotation Property: obo:IAO_0000700 (preferred_root)
# Annotation Property: obo:IAO_0000700 (has ontology root term)

AnnotationAssertion(rdfs:label obo:IAO_0000700 "preferred_root")

Expand Down Expand Up @@ -3462,11 +3462,11 @@ AnnotationAssertion(rdfs:label oboInOwl:hasBroadSynonym "has_broad_synonym")

AnnotationAssertion(rdfs:label oboInOwl:hasDbXref "database_cross_reference")

# Annotation Property: oboInOwl:hasExactSynonym (has_exact_synonym)
# Annotation Property: oboInOwl:hasExactSynonym (has exact synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasExactSynonym "has_exact_synonym")

# Annotation Property: oboInOwl:hasNarrowSynonym (has_narrow_synonym)
# Annotation Property: oboInOwl:hasNarrowSynonym (has narrow synonym)

AnnotationAssertion(rdfs:label oboInOwl:hasNarrowSynonym "has_narrow_synonym")

Expand Down Expand Up @@ -5043,7 +5043,7 @@ AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_0000149 "pigment cell")
AnnotationAssertion(rdfs:label obo:CL_0000149 "visual pigment cell")
SubClassOf(obo:CL_0000149 obo:CL_0000147)

# Class: obo:CL_0000150 (glandular secretory epithelial cell)
# Class: obo:CL_0000150 (glandular epithelial cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "ORCID:0000-0002-7073-9172") obo:IAO_0000115 obo:CL_0000150 "An epithelial cell, located in a gland, that is specialised for the synthesis and secretion of specific biomolecules, such as hormones, or mucous.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0000150 "CALOHA:TS-2085")
Expand Down Expand Up @@ -6399,7 +6399,7 @@ AnnotationAssertion(obo:IAO_0100001 obo:CL_0000316 obo:PO_0000082)
AnnotationAssertion(rdfs:label obo:CL_0000316 "obsolete ray initial")
AnnotationAssertion(owl:deprecated obo:CL_0000316 "true"^^xsd:boolean)

# Class: obo:CL_0000317 (sebocyte)
# Class: obo:CL_0000317 (sebum secreting cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D012629") Annotation(oboInOwl:hasDbXref "PMID:19944183") obo:IAO_0000115 obo:CL_0000317 "An epithelial cell that is part of a sebaceous gland. This cell produces and secretes sebum, an oily, lipid-rich substance, through holocrine secretion where the entire cell ruptures to release its contents.")
AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_0000317 "sebum secreting cell")
Expand Down Expand Up @@ -14322,7 +14322,7 @@ EquivalentClasses(obo:CL_0002058 ObjectIntersectionOf(obo:CL_0000875 ObjectSomeV
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002058 obo:CL_0000875)
SubClassOf(obo:CL_0002058 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0002398))

# Class: obo:CL_0002059 (CD8-alpha-positive thymic conventional dendritic cell)
# Class: obo:CL_0002059 (CD8alpha-positive thymic conventional dendritic cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:19273629") Annotation(oboInOwl:hasDbXref "http://www.immgen.org/index_content.html") obo:IAO_0000115 obo:CL_0002059 "A conventional thymic dendritic cell that is CD8-alpha-positive.")
AnnotationAssertion(terms:contributor obo:CL_0002059 <https://orcid.org/0000-0003-1980-3228>)
Expand Down Expand Up @@ -15247,7 +15247,7 @@ AnnotationAssertion(rdfs:comment obo:CL_0002139 "These cells are reportedly CD31
AnnotationAssertion(rdfs:label obo:CL_0002139 "endothelial cell of vascular tree")
SubClassOf(obo:CL_0002139 obo:CL_0000115)

# Class: obo:CL_0002140 (skin sebocyte)
# Class: obo:CL_0002140 (acinar cell of sebaceous gland)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:37205445") obo:IAO_0000115 obo:CL_0002140 "An acinar cell that is part of a skin sebaceous gland. This cell produces and secretes sebum into hair follicles.")
AnnotationAssertion(terms:contributor obo:CL_0002140 <https://orcid.org/0000-0003-1980-3228>)
Expand Down Expand Up @@ -18555,7 +18555,7 @@ SubClassOf(obo:CL_0002453 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_000101
SubClassOf(obo:CL_0002453 ObjectSomeValuesFrom(obo:RO_0002202 obo:CL_0000339))
SubClassOf(obo:CL_0002453 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0030154))

# Class: obo:CL_0002454 (CD4-negative, CD8-alpha-negative, CD11b-positive dendritic cell)
# Class: obo:CL_0002454 (Cd4-negative, CD8_alpha-negative, CD11b-positive dendritic cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "http://www.immgen.org/index_content.html") obo:IAO_0000115 obo:CL_0002454 "CD4-negative, CD8-alpha-negative, CD11b-positive dendritic cell is a conventional dendritic cell that is CD11b-positive, CD4-negative, CD8-alpha-negative and is CD205-positive.")
AnnotationAssertion(terms:contributor obo:CL_0002454 <https://orcid.org/0000-0003-1980-3228>)
Expand Down Expand Up @@ -18613,7 +18613,7 @@ AnnotationAssertion(rdfs:label obo:CL_0002459 "langerin-negative dermal dendriti
EquivalentClasses(obo:CL_0002459 ObjectIntersectionOf(obo:CL_0001006 ObjectSomeValuesFrom(obo:CL_4030046 obo:PR_000001010) ObjectSomeValuesFrom(obo:RO_0002104 obo:PR_000001012)))
SubClassOf(Annotation(oboInOwl:is_inferred "true") obo:CL_0002459 obo:CL_0001006)

# Class: obo:CL_0002460 (CD8-alpha-negative thymic conventional dendritic cell)
# Class: obo:CL_0002460 (CD8alpha-negative thymic conventional dendritic cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:19273629") Annotation(oboInOwl:hasDbXref "http://www.immgen.org/index_content.html") obo:IAO_0000115 obo:CL_0002460 "A conventional thymic dendritic cell that is CD8-alpha-negative.")
AnnotationAssertion(terms:contributor obo:CL_0002460 <https://orcid.org/0000-0003-1980-3228>)
Expand Down Expand Up @@ -20459,7 +20459,7 @@ AnnotationAssertion(oboInOwl:hasDbXref obo:CL_0002655 "FMA:70732")
AnnotationAssertion(rdfs:label obo:CL_0002655 "epithelial cell of stratum spinosum of esophageal epithelium")
SubClassOf(obo:CL_0002655 obo:CL_0002252)

# Class: obo:CL_0002656 (glandular endometrial unciliated epithelial cell)
# Class: obo:CL_0002656 (glandular cell of endometrium)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "GOC:tfm") Annotation(oboInOwl:hasDbXref "PMID:25023676") obo:IAO_0000115 obo:CL_0002656 "A glandular epithelial cell of the endometrium. Following ovulation, these cells secrete a glycogen-rich substance known as histotroph or uterine milk, which nourishes the embryo if implantation occurs.")
AnnotationAssertion(terms:contributor obo:CL_0002656 <https://orcid.org/0000-0003-1980-3228>)
Expand Down Expand Up @@ -27997,7 +27997,7 @@ AnnotationAssertion(rdfs:label obo:CL_1001586 "mammary gland glandular cell")
EquivalentClasses(obo:CL_1001586 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001911)))
SubClassOf(obo:CL_1001586 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0003244))

# Class: obo:CL_1001587 (uterine cervix secretory cell)
# Class: obo:CL_1001587 (uterine cervix glandular cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NPX:PDR") obo:IAO_0000115 obo:CL_1001587 "Glandular cell of uterine cervix epithelium.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001587 "CALOHA:TS-1273")
Expand All @@ -28018,7 +28018,7 @@ AnnotationAssertion(rdfs:label obo:CL_1001588 "colon glandular cell")
EquivalentClasses(obo:CL_1001588 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001155)))
SubClassOf(obo:CL_1001588 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000397))

# Class: obo:CL_1001589 (duodenum secretory cell)
# Class: obo:CL_1001589 (duodenum glandular cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NPX:PDR") obo:IAO_0000115 obo:CL_1001589 "Glandular cell of duodenal epithelium. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Brunner's gland cell.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001589 "CALOHA:TS-1275")
Expand All @@ -28027,7 +28027,7 @@ AnnotationAssertion(rdfs:label obo:CL_1001589 "duodenum secretory cell")
EquivalentClasses(obo:CL_1001589 ObjectIntersectionOf(obo:CL_1100001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0002114)))
SubClassOf(obo:CL_1001589 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0008346))

# Class: obo:CL_1001590 (epididymis secretory cell)
# Class: obo:CL_1001590 (epididymis glandular cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NPX:PDR") obo:IAO_0000115 obo:CL_1001590 "Glandular cell of epididymal epithelium.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001590 "CALOHA:TS-1276")
Expand All @@ -28037,7 +28037,7 @@ AnnotationAssertion(rdfs:label obo:CL_1001590 "epididymis secretory cell")
EquivalentClasses(obo:CL_1001590 ObjectIntersectionOf(obo:CL_1100001 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001301)))
SubClassOf(obo:CL_1001590 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004544))

# Class: obo:CL_1001591 (oviduct secretory cell)
# Class: obo:CL_1001591 (oviduct glandular cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "HPA:HPA") Annotation(oboInOwl:hasDbXref "NPX:PDR") obo:IAO_0000115 obo:CL_1001591 "Glandular cell of oviduct epithelium. Example: peg cells, ciliated cells.")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001591 "CALOHA:TS-1277")
Expand Down Expand Up @@ -28098,7 +28098,7 @@ AnnotationAssertion(rdfs:label obo:CL_1001597 "seminal vesicle glandular cell")
EquivalentClasses(obo:CL_1001597 ObjectIntersectionOf(obo:CL_0000150 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000998)))
SubClassOf(obo:CL_1001597 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0004805))

# Class: obo:CL_1001598 (small intestine secretory cell)
# Class: obo:CL_1001598 (small intestine glandular cell)

AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCI_Thesaurus:Small_Intestinal_Glandular_Cell") Annotation(oboInOwl:hasDbXref "NPX:PDR") obo:IAO_0000115 obo:CL_1001598 "A glandular cell found in the epithelium of the small intestine. Example: Enterocytes, Goblet cells, enteroendocrine cells; Paneth cells; M cells; Somatostatin-secreting Cells (D-cells) .")
AnnotationAssertion(oboInOwl:hasDbXref obo:CL_1001598 "CALOHA:TS-1286")
Expand Down
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