Skip to content

Commit

Permalink
Additional taxon constraints, emphasis on human subset. Issue #703
Browse files Browse the repository at this point in the history
  • Loading branch information
cmungall committed Jul 20, 2015
1 parent 343e3ba commit 57cccbc
Showing 1 changed file with 14 additions and 5 deletions.
19 changes: 14 additions & 5 deletions uberon_edit.obo
Original file line number Diff line number Diff line change
Expand Up @@ -10054,6 +10054,7 @@ intersection_of: UBERON:0002530 ! gland
intersection_of: capable_of GO:0055078 ! sodium ion homeostasis
relationship: confers_advantage_in ENVO:00000447 ! marine biome
relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata
relationship: never_in_taxon NCBITaxon:40674 ! Mammalia
subset: organ_slim

[Term]
Expand Down Expand Up @@ -19352,6 +19353,7 @@ xref: TGMA:0000000 ! hemolymph
xref: MESH:D006458 ! hemolymph
is_a: UBERON:0000463 ! portion of organism substance
relationship: part_of UBERON:0001009 ! circulatory system
relationship: never_in_taxon NCBITaxon:33511 ! Deuterostomia

[Term]
id: UBERON:0001013
Expand Down Expand Up @@ -79570,6 +79572,7 @@ relationship: connects UBERON:0000981 ! femur
relationship: connects UBERON:0000979 ! tibia
relationship: connects UBERON:0002446 ! patella
relationship: part_of UBERON:0000978 ! leg
relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens
xref: SCTID:116010006 ! Stifle joint
xref: ncithesaurus:Stifle_Joint ! stifle joint
xref: MESH:D013264
Expand Down Expand Up @@ -87946,6 +87949,7 @@ xref: BILA:0000117 ! tail
is_a: UBERON:0011676 ! subdivision of organism along main body axis
relationship: part_of UBERON:0000154 ! posterior region of body
relationship: only_in_taxon NCBITaxon:33213 ! Bilateria
relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens
subset: efo_slim
subset: pheno_slim

Expand Down Expand Up @@ -143788,6 +143792,7 @@ xref: BTO:0000369 ! egg
is_a: UBERON:0002050 ! embryonic structure
relationship: develops_from UBERON:0000474 ! female reproductive system
xref: BSA:0000081 ! egg
relationship: never_in_taxon NCBITaxon:32525 ! Theria

[Term]
id: UBERON:0005079
Expand All @@ -143800,6 +143805,7 @@ xref: WBbt:0005843 ! eggshell
xref: MESH:D004528 ! egg shell
is_a: UBERON:0000476 ! acellular anatomical structure
relationship: bounding_layer_of UBERON:0007379 ! egg
relationship: never_in_taxon NCBITaxon:32525 ! Theria

[Term]
id: UBERON:0005307
Expand Down Expand Up @@ -156561,7 +156567,7 @@ intersection_of: UBERON:0001037 ! strand of hair
intersection_of: part_of UBERON:0011933 ! vibrissa unit
relationship: capable_of_part_of GO:0050975 ! sensory perception of touch
relationship: only_in_taxon NCBITaxon:40674 {source="Wikipedia"} ! Mammalia
relationship: dubious_for_taxon NCBITaxon:9606 {source="Skinbase"} ! Homo sapiens
relationship: never_in_taxon NCBITaxon:9606 {source="Skinbase"} ! Homo sapiens
property_value: taxon_notes "In harbor seals, the structure of the vibrissal shaft is undulated (wavy) and flattened. This specialization is also found in most true seals. In contrast, the whiskers of the California sea lion are circular or elliptical in cross-section and are smooth." xsd:string {source="http://en.wikipedia.org/wiki/Hydrodynamic_reception#Species_differences_in_vibrissae"}

[Term]
Expand Down Expand Up @@ -161775,6 +161781,13 @@ subset: grouping_class
xref: MESH:D014688 ! venom
xref: BTO:0001439 ! venom
is_a: UBERON:0000456 ! bodily secretion
relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens
relationship: present_in_taxon NCBITaxon:6656 ! Arthropoda
relationship: present_in_taxon NCBITaxon:7898 ! Actinopterygii
relationship: present_in_taxon NCBITaxon:8314 ! Salamandridae
relationship: present_in_taxon NCBITaxon:9257 ! Ornithorhynchus
relationship: present_in_taxon NCBITaxon:264759 {source="Wikipedia"} ! Solenodon cubanus
relationship: present_in_taxon NCBITaxon:79805 {source="Wikipedia"} ! Solenodon paradoxus

[Term]
id: UBERON:0011579
Expand All @@ -161784,10 +161797,6 @@ property_value: curator_notes "we include a separate class for snake venom gland
subset: functional_classification
intersection_of: UBERON:0002365 ! exocrine gland
intersection_of: produces UBERON:0007113 ! venom
relationship: present_in_taxon NCBITaxon:6656 ! Arthropoda
relationship: present_in_taxon NCBITaxon:7898 ! Actinopterygii
relationship: present_in_taxon NCBITaxon:8314 ! Salamandridae
relationship: present_in_taxon NCBITaxon:9257 ! Ornithorhynchus
xref: SCTID:362181001 ! Entire venom gland

[Term]
Expand Down

0 comments on commit 57cccbc

Please sign in to comment.