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NTR descending thin limb of loop of Henle subclasses #3105

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aleixpuigb opened this issue Oct 31, 2023 · 1 comment · Fixed by #3173
Closed

NTR descending thin limb of loop of Henle subclasses #3105

aleixpuigb opened this issue Oct 31, 2023 · 1 comment · Fixed by #3173

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@aleixpuigb
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aleixpuigb commented Oct 31, 2023

Terms requested from HuBMAP using a kidney MIRACL sheet.

Preferred term label:
descending thin limb of loop of Henle 2

Synonyms

Definitions (free text, please give PubMed ID)
A subtype of descending thin limb of loop of Henle, part of the long loop nephrons (juxtaglomerular nephrons), and found in outer medulla of the kidney

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon)
part of long descending thin limb
part of outer medulla of kidney


Preferred term label:
descending thin limb of loop of Henle 3

Synonyms

Definitions (free text, please give PubMed ID)
A subtype of descending thin limb of loop of Henle, part of the long loop nephrons (juxtaglomerular nephrons), and found in inner medulla of the kidney

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon)
part of long descending thin limb
part of inner medulla of kidney

@aleixpuigb
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aleixpuigb commented Oct 31, 2023

To harmonise with the cell types created I would follow the same pattern:

  • 'kidney loop of Henle long descending thin limb outer medulla'
  • 'kidney loop of Henle long descending thin limb inner medulla'

Synonyms (respectively):

  • long descending limb of the loop of Henle in the outer medulla, DTL2 PMID:33769951
  • long descending limb of the loop of Henle in the inner medulla, DTL3 PMID:33769951
    @emquardokus are 'descending thin limb of loop of Henle 2' and 'descending thin limb of loop of Henle 3' required as synonyms? If so, is there a dbxref available?

Definitions (respectively):
To harmonize with the Uberon style they need edits:

  • "A section of the long descending thin limb of the loop of Henle that is part of the outer medulla of the kidney." PMID:33769951
  • "A section of the long descending thin limb of the loop of Henle that is part of the inner medulla of the kidney." PMID:33769951

aleixpuigb added a commit that referenced this issue Jan 15, 2024
Fixes #3105 NTR descending thin limb of loop of Henle subclasses
aleixpuigb added a commit that referenced this issue Jan 16, 2024
…loop_Henle

Fixes #3105 NTR descending thin limb of loop of Henle subclasses
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