Delete all external axioms on base file #2377

anitacaron · 2022-04-01T15:37:20Z

Partially fixes #2263.

List of definitions that are different in UBERON and source ontology.

Term ID	Def in UBERON	Def in source
RO:0002170	"Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern]	a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b
RO:0002176	"Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship." [http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern]	c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system.
RO:0002256	"t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T." [GO:0001759]	t1 induced_by t2 if there is a process of developmental induction (GO:0031128) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor anatomical structure type T to T', where T' develops_from T
RO:0002229	"Relation between occurrents, shares an end boundary with." [Allen:starts, https://orcid.org/0000-0002-6601-2165, ZFS:finishes]	inverse of ends with
RO:0002493	"Relation between continuant and occurrent, such that c ceases to exist at the end of p." [https://orcid.org/0000-0002-6601-2165]	x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y).
RO:0002488	"Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [https://orcid.org/0000-0002-6601-2165]	x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y).
RO:0002568	"m1 has_muscle_antagonist m2 iff m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position." [Wikipedia:Antagonist_(muscle)]	m1 has_muscle_antagonist m2 iff m1 has_muscle_insertion s, m2 has_muscle_insection s, m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position.
RO:0002373	"m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone." [Wikipedia:Insertion_(anatomy)]	m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone.
RO:0002372	def: "m has_muscle_origin s iff m is attaches_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to." [Wikipedia:Insertion_(anatomy)#Muscles]	m has_muscle_origin s iff m is attached_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to.
RO:0002160	def: "S only_in_taxon T iff: S SubClassOf in_taxon only T." [PMID:20973947]	x only in taxon y if and only if x is in taxon y, and there is no other organism z such that y!=z a and x is in taxon z.
BSPO:0001108	"X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y." [https://orcid.org/0000-0002-6601-2165]	"X distalmost part of Y <=> X is in distal side of Y and X is adjacent to the distal boundary of Y" [https://orcid.org/0000-0002-6601-2165]
BSPO:0000098	"x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [http://orcid.org/0000-0002-6601-2165]	"x dorsal to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm]
BSPO:0001100	"X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion." [http://orcid.org/0000-0002-6601-2165]	"X superficial part of Y <=> if Y is subdivided into two superficial and deep portions, X is part of the superficial portion." [BSPO:cjm]
BSPO:0001107	"This relation holds when both the deep_to and ajdacent_to relationship similarly hold." [http://orcid.org/0000-0002-6601-2165]	"x immediately deep to y iff x deep_to y and x is contiguous with y." [BSPO:curators]
BSPO:0000099	"x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail." [http://orcid.org/0000-0002-6601-2165]	"x posterior to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm]
BSPO:0000100	"x proximal_to y iff x is closer to the point of attachment with the body than y." [http://orcid.org/0000-0002-6601-2165]	"x proximal to y iff x is closer to the point of attachment with the body than y." [BSPO:cjm]
BSPO:0001106	"X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y." [https://orcid.org/0000-0002-6601-2165]	"X proximalmost part of Y <=> X is in proximal side of Y and X is adjacent to the proximal boundary of Y" [https://orcid.org/0000-0002-6601-2165]
BSPO:0000102	"x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)." [http://orcid.org/0000-0002-6601-2165]	"x ventral to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that extends through an organism from back (e.g. spinal column) to front (e.g. belly)." [BSPO:cjm]
BSPO:0000096	"x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer." [http://orcid.org/0000-0002-6601-2165]	"x anterior to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that extends through an organism from head end to opposite end of body or tail." [BSPO:cjm]

List of properties that all the axioms in UBERON don't exist in source. (No modifications were done, so cannot see in the diffs)

Term ID
RO:0002082
RO:0002376
RO:0002215
RO:0002322
RO:0002170
RO:0002176
RO:0002150
RO:0002433
RO:0002256
RO:0002226
RO:0002569
BSPO:0000097

shawntanzk · 2022-04-04T13:08:03Z

Avoid changing release artefacts goals.
Edit the edit file and remove the external axioms from the edit file.

src/ontology/uberon-edit.obo

matentzn

Excellent work @anitacaron very meticulous. Can you confirm once more that you have not removed any logical axioms that are not in the imported files?

src/ontology/uberon-edit.obo

matentzn · 2022-04-28T08:41:30Z

Well, if @cmungall approves, you can delete all of the definitions.. Maybe have @dosumis do one sweep as well.

dosumis · 2022-04-28T09:23:34Z

Are all logical axioms deleted from uberon in the import from RO? If so, I'm happy to approve their deletion here. Otherwise I'd like a report of the differences (as for definitions) and a further review.

dosumis · 2022-04-28T09:26:13Z

I'll have a quick check through of defs, but in general I'm happy to go with RO defs as these are the ones I've worked on. @cmungall is probably be better placed to spot anything important that might be lost.

dosumis · 2022-04-28T10:09:43Z

Have now reviewed text defs. Happy for all the Uberon defs listed in the table to be deleted.

In these 2 cases, we should probably add the more accessible def from Uberon as editor note or comment to RO.

RO:0002493	"Relation between continuant and occurrent, such that c ceases to exist at the end of p." [https://orcid.org/0000-0002-6601-2165]	x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y).
RO:0002488	"Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s." [https://orcid.org/0000-0002-6601-2165]	x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y).

anitacaron · 2022-05-04T08:32:41Z

Besides the definition, there isn't any difference for the same property. Instead, all logical axioms in UBERON don't exist in the source.

github-actions · 2022-05-04T12:08:11Z

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-05-06/uberon-simple.owl
Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-simple.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-05-06/uberon-simple.owl
Loaded from: file:/work/src/ontology/uberon-simple.owl

Ontology imports

Ontology annotations

IAO_isReversiblePropertyChain `http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain`

Removed

AnnotationProperty: IAO_isReversiblePropertyChain

aboral to `http://purl.obolibrary.org/obo/BSPO_0015202`

Removed

aboral to label "aboral_to"

adjacent_to `http://purl.obolibrary.org/obo/RO_0002220`

Removed

adjacent_to definition "x adjacent_to y iff: x and y share a boundary."

anterior_to `http://purl.obolibrary.org/obo/BSPO_0000096`

Removed

anterior_to definition "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"
anterior_to contributor 0000-0002-6601-2165

attached to part of `http://purl.obolibrary.org/obo/RO_0002177`

Removed

attaches_to o part_of SubPropertyOf: attached to part of
- IAO_isReversiblePropertyChain "true"

Added

attached to part of label "attached to part of"
attaches_to o part_of SubPropertyOf: attached to part of

attaches_to `http://purl.obolibrary.org/obo/RO_0002371`

Added

attaches_to label "attached to"

bearer of `http://purl.obolibrary.org/obo/RO_0000053`

Removed

bearer of example of usage "this apple is bearer of this red color"@en
bearer of RO_0001900 RO_0001901
bearer of definition "Inverse of characteristic_of"@en
bearer of label "has characteristic"@en
bearer of database_cross_reference "RO:0000053"
bearer of has_obo_namespace "uberon"
bearer of definition "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en
bearer of label "bearer of"@en
bearer of example of usage "this vase is bearer of this fragility"@en
bearer of id "bearer_of"
bearer of IAO_0000118 "bearer_of"@en
bearer of label "bearer of"
bearer of IAO_0000111 "bearer of"@en
bearer of shorthand "bearer_of"
bearer of editor note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en
bearer of IAO_0000118 "is bearer of"@en
ObjectProperty: bearer of
InverseFunctional: bearer of

boundary of `http://purl.obolibrary.org/obo/RO_0002000`

Removed

boundary of label "boundary of"
boundary of definition "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity"@en
boundary of id "boundary_of"
boundary of database_cross_reference "RO:0002000"
boundary of shorthand "boundary_of"
boundary of has_obo_namespace "uberon"
boundary of label "2D boundary of"@en
ObjectProperty: boundary of
boundary of InverseOf has 2D boundary

branching_part_of `http://purl.obolibrary.org/obo/RO_0002380`

Added

branching_part_of label "branching part of"

child nucleus of `http://purl.obolibrary.org/obo/RO_0002476`

Removed

child nucleus of id "child_nucleus_of"
child nucleus of shorthand "child_nucleus_of"
child nucleus of definition "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d"
child nucleus of database_cross_reference "RO:0002476"
child nucleus of label "child nucleus of"
child nucleus of has_obo_namespace "uberon"
ObjectProperty: child nucleus of
child nucleus of SubPropertyOf: developmentally preceded by

child nucleus of in hermaphrodite `http://purl.obolibrary.org/obo/RO_0002477`

Removed

child nucleus of in hermaphrodite definition "A child nucleus relationship in which the cells are part of a hermaphroditic organism"
child nucleus of in hermaphrodite label "child nucleus of in hermaphrodite"
child nucleus of in hermaphrodite id "child_nucleus_of_in_hermaphrodite"
child nucleus of in hermaphrodite database_cross_reference "RO:0002477"
child nucleus of in hermaphrodite shorthand "child_nucleus_of_in_hermaphrodite"
child nucleus of in hermaphrodite has_obo_namespace "uberon"
ObjectProperty: child nucleus of in hermaphrodite
child nucleus of in hermaphrodite SubPropertyOf: child nucleus of

child nucleus of in male `http://purl.obolibrary.org/obo/RO_0002478`

Removed

child nucleus of in male label "child nucleus of in male"
child nucleus of in male has_obo_namespace "uberon"
child nucleus of in male id "child_nucleus_of_in_male"
child nucleus of in male definition "A child nucleus relationship in which the cells are part of a male organism"
child nucleus of in male database_cross_reference "RO:0002478"
child nucleus of in male shorthand "child_nucleus_of_in_male"
ObjectProperty: child nucleus of in male
child nucleus of in male SubPropertyOf: child nucleus of

composed primarily of `http://purl.obolibrary.org/obo/RO_0002473`

Removed

composed primarily of definition "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y."

confers_advantage_in `http://purl.obolibrary.org/obo/RO_0002322`

Removed

confers_advantage_in has_narrow_synonym "adapted_for"
confers_advantage_in label "confers_advantage_in"

Added

confers_advantage_in label "confers advantage in"

connected to `http://purl.obolibrary.org/obo/RO_0002170`

Removed

connected to definition "Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship."
- database_cross_reference "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern"

connects `http://purl.obolibrary.org/obo/RO_0002176`

Removed

connects definition "Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship."
- database_cross_reference "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern"

continuous with `http://purl.obolibrary.org/obo/RO_0002150`

Added

continuous with label "continuous with"

developmentally contributes to `http://purl.obolibrary.org/obo/RO_0002255`

Removed

developmentally contributes to label "developmentally contributes to"@en
developmentally contributes to label "developmentally_contributes_to"
developmentally contributes to IAO_0000114 IAO_0000125
developmentally contributes to in_subset RO_0002259
developmentally contributes to shorthand "developmentally_contributes_to"
developmentally contributes to definition "inverse of has developmental contribution from"
developmentally contributes to IAO_0000117 "Chris Mungall"
developmentally contributes to id "developmentally_contributes_to"
developmentally contributes to database_cross_reference "RO:0002255"
developmentally contributes to has_obo_namespace "uberon"
ObjectProperty: developmentally contributes to
developmentally contributes to SubPropertyOf: has potential to developmentally contribute to
develops_into o part_of SubPropertyOf: developmentally contributes to

developmentally preceded by `http://purl.obolibrary.org/obo/RO_0002258`

Removed

developmentally preceded by database_cross_reference "RO:0002258"
developmentally preceded by IAO_0000117 "Chris Mungall"
developmentally preceded by label "developmentally preceded by"
developmentally preceded by shorthand "developmentally_preceded_by"
developmentally preceded by label "developmentally preceded by"@en
developmentally preceded by IAO_0000114 IAO_0000125
developmentally preceded by comment "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from"
developmentally preceded by editor note false
developmentally preceded by curator notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one"
developmentally preceded by has_obo_namespace "uberon"
developmentally preceded by id "developmentally_preceded_by"
developmentally preceded by definition "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p"
ObjectProperty: developmentally preceded by

developmentally replaces `http://purl.obolibrary.org/obo/RO_0002285`

Removed

developmentally replaces SubPropertyOf: developmentally preceded by

Added

developmentally replaces label "developmentally replaces"

developmentally_induced_by `http://purl.obolibrary.org/obo/RO_0002256`

Removed

developmentally_induced_by SubPropertyOf: developmentally preceded by

Added

developmentally_induced_by label "developmentally induced by"

developmentally_succeeded_by `http://purl.obolibrary.org/obo/uberon/core#developmentally_succeeded_by`

Removed

ObjectProperty: developmentally_succeeded_by

develops from `http://purl.obolibrary.org/obo/RO_0002202`

Removed

develops from InverseOf develops_into
develops from SubPropertyOf: developmentally preceded by

develops from part of `http://purl.obolibrary.org/obo/RO_0002225`

Removed

develops from part of label "develops_from_part_of"

Added

develops from part of label "develops from part of"

develops_in `http://purl.obolibrary.org/obo/RO_0002226`

Removed

develops_in label "develops_in"
develops_in comment "This relation take from EHDAA2 - precise semantics yet to be defined"
develops_in SubPropertyOf: developmentally preceded by

Added

develops_in label "develops in"

develops_into `http://purl.obolibrary.org/obo/RO_0002203`

Removed

develops_into database_cross_reference "RO:0002203"
develops_into in_subset RO_0002259
develops_into label "develops into"@en
develops_into has_obo_namespace "uberon"
develops_into IAO_0000114 IAO_0000125
develops_into IAO_0000117 "David Osumi-Sutherland"@en
develops_into definition "inverse of develops from"
develops_into IAO_0000117 "Chris Mungall"@en
develops_into id "develops_into"
develops_into shorthand "develops_into"
develops_into IAO_0000117 "Terry Meehan"@en
develops_into label "develops_into"
ObjectProperty: develops_into
develops_into SubPropertyOf: has potential to develop into
develops_into SubPropertyOf: has potential to directly develop into
Transitive: develops_into

directly develops from `http://purl.obolibrary.org/obo/RO_0002207`

Removed

directly develops from label "directly_develops_from"

Added

directly develops from label "directly develops from"

distal_to `http://purl.obolibrary.org/obo/BSPO_0000097`

Removed

distal_to definition "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

distalmost part of `http://purl.obolibrary.org/obo/BSPO_0001108`

Removed

distalmost part of definition "X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

dorsal_to `http://purl.obolibrary.org/obo/BSPO_0000098`

Removed

dorsal_to definition "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

ends `http://purl.obolibrary.org/obo/RO_0002229`

Removed

ends definition "Relation between occurrents, shares an end boundary with."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"
- database_cross_reference "Allen:starts"
- database_cross_reference "ZFS:finishes"

existence ends during or before `http://purl.obolibrary.org/obo/RO_0002497`

Removed

developmentally_succeeded_by o existence ends during or before SubPropertyOf: existence ends during or before

existence ends with `http://purl.obolibrary.org/obo/RO_0002493`

Removed

existence ends with definition "Relation between continuant and occurrent, such that c ceases to exist at the end of p."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

existence starts during `http://purl.obolibrary.org/obo/RO_0002488`

Removed

existence starts during definition "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

existence starts during or after `http://purl.obolibrary.org/obo/RO_0002496`

Removed

developmentally preceded by o existence starts during or after SubPropertyOf: existence starts during or after

existence starts with `http://purl.obolibrary.org/obo/RO_0002489`

Removed

existence starts with definition "Relation between continuant and occurrent, such that c comes into existence at the start of p."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

expand expression to `http://purl.obolibrary.org/obo/IAO_0000424`

Removed

expand expression to label "expand expression to"

has 2D boundary `http://purl.obolibrary.org/obo/RO_0002002`

Added

has 2D boundary label "has 2D boundary"

has developmental contribution from `http://purl.obolibrary.org/obo/RO_0002254`

Removed

has developmental contribution from InverseOf developmentally contributes to
has developmental contribution from SubPropertyOf: developmentally preceded by

has muscle insertion `http://purl.obolibrary.org/obo/RO_0002373`

Removed

has muscle insertion see also dbpprop_insertion
has muscle insertion label "has_muscle_insertion"
has muscle insertion comment "The insertion is the point of attachment of a muscle that moves the most when the muscle shortens, or the most distal end of limb muscles"
has muscle insertion definition "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone."
- database_cross_reference "Wikipedia:Insertion_(anatomy)"

Added

has muscle insertion label "has muscle insertion"

has potential to develop into `http://purl.obolibrary.org/obo/RO_0002387`

Removed

has potential to develop into definition "x has the potential to develop into y iff x develops into y or if x is capable of developing into y."

has potential to developmentally contribute to `http://purl.obolibrary.org/obo/RO_0002385`

Removed

has potential to developmentally contribute to definition "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y."

has potential to directly develop into `http://purl.obolibrary.org/obo/RO_0002388`

Removed

has potential to directly develop into label "has potential to directly develop into"@en
has potential to directly develop into definition "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y"@en
has potential to directly develop into id "has_potential_to_directly_develop_into"
has potential to directly develop into database_cross_reference "RO:0002388"
has potential to directly develop into shorthand "has_potential_to_directly_develop_into"
has potential to directly develop into IAO_0000114 IAO_0000428
has potential to directly develop into label "has potential to directly develop into"
has potential to directly develop into has_obo_namespace "uberon"
has potential to directly develop into IAO_0000117 "Chris Mungall"
has potential to directly develop into definition "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y."
ObjectProperty: has potential to directly develop into
has potential to directly develop into SubPropertyOf: has potential to develop into

has quality `http://purl.obolibrary.org/obo/RO_0000086`

Removed

has quality SubPropertyOf: bearer of

has skeleton `http://purl.obolibrary.org/obo/RO_0002551`

Removed

has skeleton definition "A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

has_fused_element `http://purl.obolibrary.org/obo/RO_0002374`

Removed

has_fused_element definition "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat."
has_fused_element comment "A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B."
has_fused_element label "has_fused_element"

Added

has_fused_element label "derived from ancestral fusion of"

has_muscle_antagonist `http://purl.obolibrary.org/obo/RO_0002568`

Removed

has_muscle_antagonist see also dbpprop_antagonist
has_muscle_antagonist definition "m1 has_muscle_antagonist m2 iff m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position."
- database_cross_reference "Wikipedia:Antagonist_(muscle)"
has_muscle_antagonist label "has_muscle_antagonist"

has_muscle_origin `http://purl.obolibrary.org/obo/RO_0002372`

Removed

has_muscle_origin definition "m has_muscle_origin s iff m is attaches_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to."
- database_cross_reference "Wikipedia:Insertion_(anatomy)#Muscles"
has_muscle_origin see also dbpprop_origin
has_muscle_origin comment "The origin is the end of a muscle that attaches to the more fixed part of the skeleton, which is the proximal end in limb muscles"
has_muscle_origin label "has_muscle_origin"

Added

has_muscle_origin label "has muscle origin"

homologous_to `http://purl.obolibrary.org/obo/RO_0002158`

Removed

homologous_to label "homologous_to"

immediate transformation of `http://purl.obolibrary.org/obo/RO_0002495`

Removed

immediate transformation of has_exact_synonym "direct_transformation_of"
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

immediately posterior to `http://purl.obolibrary.org/obo/BSPO_0015012`

Removed

immediately posterior to label "immediately_posterior_to"

immediately preceded by `http://purl.obolibrary.org/obo/RO_0002087`

Removed

immediately preceded by external_definition "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]."
- source "SIO:000251"
immediately preceded by definition "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)."

Added

immediately preceded by label "immediately preceded by"

immediately superficial to `http://purl.obolibrary.org/obo/BSPO_0015014`

Removed

immediately superficial to label "immediately_superficial_to"

immediately_anterior_to `http://purl.obolibrary.org/obo/BSPO_0015009`

Removed

immediately_anterior_to label "immediately_anterior_to"
immediately_anterior_to SubPropertyOf: adjacent_to

immediately_deep_to `http://purl.obolibrary.org/obo/BSPO_0001107`

Removed

immediately_deep_to definition "This relation holds when both the deep_to and ajdacent_to relationship similarly hold."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

in lateral side of `http://purl.obolibrary.org/obo/BSPO_0000126`

Removed

in lateral side of definition "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

in_deep_part_of `http://purl.obolibrary.org/obo/BSPO_0001101`

Removed

in_deep_part_of label "in_deep_part_of"
in_deep_part_of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

in_dorsal_side_of `http://purl.obolibrary.org/obo/BSPO_0015101`

Removed

in_dorsal_side_of label "in_dorsal_side_of"

in_left_side_of `http://purl.obolibrary.org/obo/BSPO_0000120`

Removed

in_left_side_of label "in_left_side_of"
in_left_side_of definition "X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion."
- database_cross_reference "BSPO:PATO_mtg_2009"
in_left_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

in_right_side_of `http://purl.obolibrary.org/obo/BSPO_0000121`

Removed

in_right_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
in_right_side_of label "in_right_side_of"
in_right_side_of definition "X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion."
- database_cross_reference "BSPO:PATO_mtg_2009"

in_superficial_part_of `http://purl.obolibrary.org/obo/BSPO_0001100`

Removed

in_superficial_part_of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"
in_superficial_part_of label "in_superficial_part_of"

in_ventral_side_of `http://purl.obolibrary.org/obo/BSPO_0015102`

Removed

in_ventral_side_of label "in_ventral_side_of"

innervated_by `http://purl.obolibrary.org/obo/RO_0002005`

Removed

innervated_by has_exact_synonym "nerve supply"
- database_cross_reference "FMA:85999"
innervated_by see also dbprop_nerve
innervated_by comment "http://code.google.com/p/obo-relations/issues/detail?id=6"
innervated_by see also FMA_85999

innervates `http://purl.obolibrary.org/obo/RO_0002134`

Removed

innervates comment "http://code.google.com/p/obo-relations/issues/detail?id=6"

intersects_midsagittal_plane_of `http://purl.obolibrary.org/obo/BSPO_0005001`

Removed

intersects_midsagittal_plane_of definition "X intersects_median_plane of iff X crosses the midine plane of Y."
intersects_midsagittal_plane_of label "intersects_midsagittal_plane_of"

located in `http://purl.obolibrary.org/obo/RO_0001025`

Added

located in label "located in"

location_of `http://purl.obolibrary.org/obo/RO_0001015`

Added

location_of label "location of"

member of `http://purl.obolibrary.org/obo/RO_0002350`

Removed

member of definition "is member of is a mereological relation between a item and a collection."
member of has_obo_namespace "uberon"
member of shorthand "member_of"
member of id "member_of"
member of label "member of"
member of label "member of"@en
member of database_cross_reference "RO:0002350"
ObjectProperty: member of
member of InverseOf has member
member of SubPropertyOf: part_of

only_in_taxon `http://purl.obolibrary.org/obo/RO_0002160`

Removed

only_in_taxon definition "S only_in_taxon T iff: S SubClassOf in_taxon only T."
- database_cross_reference "PMID:20973947"

oral_to `http://purl.obolibrary.org/obo/BSPO_0015201`

Removed

oral_to id "oral_to"
oral_to has_obo_namespace "uberon"
oral_to label "oral_to"
oral_to shorthand "oral_to"
oral_to database_cross_reference "BSPO:0015201"
oral_to definition "nearer to the oral opening of the organism, on the oral-aboral axis."
- database_cross_reference "BSPO:cjm"
ObjectProperty: oral_to
Transitive: oral_to

overlaps `http://purl.obolibrary.org/obo/RO_0002131`

Removed

overlaps expand expression to "BFO_0000051 some (BFO_0000050 some ?Y)"

part of structure that is capable of `http://purl.obolibrary.org/obo/RO_0002329`

Removed

part of structure that is capable of IAO_0000118 false
part of structure that is capable of label "part of structure that is capable of"
part of structure that is capable of definition "this relation holds between c and p when c is part of some c', and c' is capable of p."
part of structure that is capable of database_cross_reference "RO:0002329"
part of structure that is capable of has_obo_namespace "uberon"
part of structure that is capable of label "part of structure that is capable of"@en
part of structure that is capable of IAO_0000117 "Chris Mungall"
part of structure that is capable of shorthand "part_of_structure_that_is_capable_of"
part of structure that is capable of id "part_of_structure_that_is_capable_of"
ObjectProperty: part of structure that is capable of
part of structure that is capable of SubPropertyOf: functionally related to
part_of o capable_of SubPropertyOf: part of structure that is capable of

postaxial_to `http://purl.obolibrary.org/obo/BSPO_0001114`

Removed

postaxial_to shorthand "postaxial_to"
postaxial_to id "postaxial_to"
postaxial_to database_cross_reference "BSPO:0001114"
postaxial_to label "postaxial_to"
postaxial_to has_obo_namespace "uberon"
postaxial_to has_related_synonym "posterior_to (developmentally)"
- database_cross_reference "MA:th"
postaxial_to definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side."
- database_cross_reference "http://medical-dictionary.thefreedictionary.com/postaxial"
ObjectProperty: postaxial_to
Transitive: postaxial_to

postaxialmost part of `http://purl.obolibrary.org/obo/BSPO_0001115`

Removed

postaxialmost part of label "postaxialmost_part_of"

posterior to `http://purl.obolibrary.org/obo/BSPO_0000099`

Removed

posterior to definition "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

preaxial_to `http://purl.obolibrary.org/obo/BSPO_1000000`

Removed

preaxial_to has_related_synonym "lateral (radial) to"
preaxial_to has_obo_namespace "uberon"
preaxial_to has_related_synonym "medial (tibial) to"
preaxial_to shorthand "preaxial_to"
preaxial_to has_related_synonym "anterior_to (developmentally)"
- database_cross_reference "MA:th"
preaxial_to id "preaxial_to"
preaxial_to database_cross_reference "BSPO:1000000"
preaxial_to definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front."
- database_cross_reference "http://medical-dictionary.thefreedictionary.com/preaxial"
preaxial_to label "preaxial_to"
ObjectProperty: preaxial_to
Transitive: preaxial_to

preaxialmost part of `http://purl.obolibrary.org/obo/BSPO_0001113`

Removed

preaxialmost part of label "preaxialmost_part_of"

preceded_by `http://purl.obolibrary.org/obo/BFO_0000062`

Removed

preceded_by definition "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)."

proximal_to `http://purl.obolibrary.org/obo/BSPO_0000100`

Removed

proximal_to definition "x proximal_to y iff x is closer to the point of attachment with the body than y."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

proximalmost_part_of `http://purl.obolibrary.org/obo/BSPO_0001106`

Removed

proximalmost_part_of definition "X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

serially_homologous_to `http://purl.obolibrary.org/obo/RO_0002159`

Removed

serially_homologous_to label "serially_homologous_to"

simultaneous with `http://purl.obolibrary.org/obo/RO_0002082`

Removed

simultaneous with definition "Relation between occurrents, shares start and end boundaries."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"
- database_cross_reference "Allen:is_equal_to"
simultaneous with label "simultaneous_with"
simultaneous with has_exact_synonym "is_equal_to"
simultaneous with has_exact_synonym "coincides_with"

Added

simultaneous with label "simultaneous with"

starts `http://purl.obolibrary.org/obo/RO_0002223`

Removed

starts definition "Relation between occurrents, shares a start boundary with."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"
- database_cross_reference "Allen:starts"

supplies `http://purl.obolibrary.org/obo/RO_0002178`

Removed

supplies comment "source: FMA"
supplies see also FMA_86003
supplies definition "relation between an artery and the structure is supplies with blood."
supplies has_exact_synonym "arterial supply of"
- database_cross_reference "FMA:86003"

surrounded by `http://purl.obolibrary.org/obo/RO_0002219`

Removed

surrounded by definition "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

Added

surrounded by label "surrounded by"

surrounds `http://purl.obolibrary.org/obo/RO_0002221`

Removed

surrounds definition "inverse of surrounded_by."
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"

tributary_of `http://purl.obolibrary.org/obo/RO_0002376`

Added

tributary_of label "tributary of"

ventral_to `http://purl.obolibrary.org/obo/BSPO_0000102`

Removed

ventral_to definition "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)."
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"

github-actions · 2022-05-04T12:08:16Z

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
Version IRI: None
Loaded from: file:/work/src/ontology/uberon-edit.obo

Right

Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
Version IRI: None
Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

2D boundary of `http://purl.obolibrary.org/obo/RO_0002000`

Added

2D boundary of database_cross_reference "RO:0002000"^^string
2D boundary of has_obo_namespace "uberon"^^string
2D boundary of shorthand "boundary_of"^^string
2D boundary of id "boundary_of"^^string
2D boundary of label "boundary of"^^string
ObjectProperty: 2D boundary of

BSPO_0001114 `http://purl.obolibrary.org/obo/BSPO_0001114`

Added

BSPO_0001114 database_cross_reference "BSPO:0001114"^^string
BSPO_0001114 definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side."^^string
- database_cross_reference "http://medical-dictionary.thefreedictionary.com/postaxial"^^[string](http://www.w3.org/2001/XMLSchema#string)
BSPO_0001114 has_related_synonym "posterior_to (developmentally)"^^string
- database_cross_reference "MA:th"^^string
BSPO_0001114 has_obo_namespace "uberon"^^string
BSPO_0001114 shorthand "postaxial_to"^^string
BSPO_0001114 id "postaxial_to"^^string
BSPO_0001114 label "postaxial_to"^^string
ObjectProperty: BSPO_0001114
Transitive: BSPO_0001114

BSPO_0015201 `http://purl.obolibrary.org/obo/BSPO_0015201`

Added

BSPO_0015201 definition "nearer to the oral opening of the organism, on the oral-aboral axis."^^string
- database_cross_reference "BSPO:cjm"^^string
BSPO_0015201 shorthand "oral_to"^^string
BSPO_0015201 has_obo_namespace "uberon"^^string
BSPO_0015201 id "oral_to"^^string
BSPO_0015201 label "oral_to"^^string
BSPO_0015201 database_cross_reference "BSPO:0015201"^^string
ObjectProperty: BSPO_0015201
Transitive: BSPO_0015201

BSPO_1000000 `http://purl.obolibrary.org/obo/BSPO_1000000`

Added

BSPO_1000000 database_cross_reference "BSPO:1000000"^^string
BSPO_1000000 has_related_synonym "lateral (radial) to"^^string
BSPO_1000000 has_related_synonym "anterior_to (developmentally)"^^string
- database_cross_reference "MA:th"^^string
BSPO_1000000 id "preaxial_to"^^string
BSPO_1000000 has_obo_namespace "uberon"^^string
BSPO_1000000 has_related_synonym "medial (tibial) to"^^string
BSPO_1000000 definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front."^^string
- database_cross_reference "http://medical-dictionary.thefreedictionary.com/preaxial"^^[string](http://www.w3.org/2001/XMLSchema#string)
BSPO_1000000 shorthand "preaxial_to"^^string
BSPO_1000000 label "preaxial_to"^^string
ObjectProperty: BSPO_1000000
Transitive: BSPO_1000000

IAO_0000424 `http://purl.obolibrary.org/obo/IAO_0000424`

Added

IAO_0000424 label "expand expression to"^^string
AnnotationProperty: IAO_0000424

aboral to `http://purl.obolibrary.org/obo/BSPO_0015202`

Removed

aboral to label "aboral to"^^string

Added

aboral to label "aboral_to"^^string
aboral to definition "nearer to the aboral opening of the organism, on the oral-aboral axis."^^string
- database_cross_reference "BSPO:cjm"^^string
Transitive: aboral to

adjacent to `http://purl.obolibrary.org/obo/RO_0002220`

Removed

adjacent to label "adjacent to"^^string

Added

adjacent to definition "x adjacent_to y iff: x and y share a boundary."^^string
adjacent to label "adjacent_to"^^string
Symmetric: adjacent to

anterior to `http://purl.obolibrary.org/obo/BSPO_0000096`

Removed

anterior to label "anterior to"^^string

Added

anterior to contributor 0000-0002-6601-2165
anterior to creation_date "2009-07-31T02:15:46Z"^^string
anterior to definition "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
anterior to label "anterior_to"^^string
Transitive: anterior to

attached to `http://purl.obolibrary.org/obo/RO_0002371`

Removed

attached to label "attached to"^^string

Added

attached to see also FMA_85990
attached to label "attaches_to"^^string
attached to SubPropertyOf: connects
attached to SubPropertyOf: attached to part of

attached to part of `http://purl.obolibrary.org/obo/RO_0002177`

Removed

attached to part of label "attached to part of"^^string

Added

attached to part of label "attaches_to_part_of"^^string
attached to o part of SubPropertyOf: attached to part of
- IAO_isReversiblePropertyChain "true"^^string

bounding layer of `http://purl.obolibrary.org/obo/RO_0002007`

Added

bounding layer of comment "A relationship that applies between a continuant and its outer, bounding layer. Examples include the relationship between a multicellular organism and its integument, between an animal cell and its plasma membrane, and between a membrane bound organelle and its outer/bounding membrane."^^string
bounding layer of SubPropertyOf: part of

branching part of `http://purl.obolibrary.org/obo/RO_0002380`

Removed

branching part of label "branching part of"^^string

Added

branching part of label "branching_part_of"^^string
branching part of see also FMA_85994
branching part of editor note "we need to check if FMA branch_of implies part_of. the relation we intend to use here should - for example, see vestibulocochlear nerve"^^string
branching part of InverseOf has branching part
branching part of SubPropertyOf: part of

capable of part of `http://purl.obolibrary.org/obo/RO_0002216`

Added

capable of part of SubPropertyOf: functionally related to

child nucleus of `http://purl.obolibrary.org/obo/RO_0002476`

Added

child nucleus of database_cross_reference "RO:0002476"^^string
child nucleus of shorthand "child_nucleus_of"^^string
child nucleus of label "child nucleus of"^^string
child nucleus of has_obo_namespace "uberon"^^string
child nucleus of id "child_nucleus_of"^^string
ObjectProperty: child nucleus of
child nucleus of Domain nucleus
child nucleus of Range nucleus

child nucleus of in hermaphrodite `http://purl.obolibrary.org/obo/RO_0002477`

Added

child nucleus of in hermaphrodite has_obo_namespace "uberon"^^string
child nucleus of in hermaphrodite label "child nucleus of in hermaphrodite"^^string
child nucleus of in hermaphrodite database_cross_reference "RO:0002477"^^string
child nucleus of in hermaphrodite id "child_nucleus_of_in_hermaphrodite"^^string
child nucleus of in hermaphrodite shorthand "child_nucleus_of_in_hermaphrodite"^^string
ObjectProperty: child nucleus of in hermaphrodite

child nucleus of in male `http://purl.obolibrary.org/obo/RO_0002478`

Added

child nucleus of in male database_cross_reference "RO:0002478"^^string
child nucleus of in male id "child_nucleus_of_in_male"^^string
child nucleus of in male shorthand "child_nucleus_of_in_male"^^string
child nucleus of in male label "child nucleus of in male"^^string
child nucleus of in male has_obo_namespace "uberon"^^string
ObjectProperty: child nucleus of in male

composed primarily of `http://purl.obolibrary.org/obo/RO_0002473`

Added

composed primarily of definition "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y."^^string
composed primarily of SubPropertyOf: has part

confers advantage in `http://purl.obolibrary.org/obo/RO_0002322`

Removed

confers advantage in label "confers advantage in"^^string

Added

confers advantage in has_narrow_synonym "adapted_for"^^string
confers advantage in label "confers_advantage_in"^^string

connected to `http://purl.obolibrary.org/obo/RO_0002170`

Added

connected to see also SIO_000652
connected to definition "Binary relationship: x connected_to y if and only if there exists some z such that z connects x and y in a ternary connected_to(x,y,z) relationship."^^string
- database_cross_reference "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern"^^[string](http://www.w3.org/2001/XMLSchema#string)
connected to comment "Connection does not imply overlaps."^^string

connects `http://purl.obolibrary.org/obo/RO_0002176`

Added

connects editor note "this is currently used for both structural relationships (such as between a valve and the chamber it connects) and abstract relationships (anatomical lines and the entities they connect)"^^string
connects definition "Binary relationship: z connects x if and only if there exists some y such that z connects x and y in a ternary connected_to(x,y,z) relationship."^^string
- database_cross_reference "http://purl.obolibrary.org/obo/uberon/docs/Connectivity-Design-Pattern"^^[string](http://www.w3.org/2001/XMLSchema#string)

continuous with `http://purl.obolibrary.org/obo/RO_0002150`

Removed

continuous with label "continuous with"^^string

Added

continuous with label "continuous_with"^^string

deep to `http://purl.obolibrary.org/obo/BSPO_0000107`

Removed

deep to label "deep to"^^string

Added

deep to label "deep_to"^^string
Transitive: deep to

derived from ancestral fusion of `http://purl.obolibrary.org/obo/RO_0002374`

Removed

derived from ancestral fusion of label "derived from ancestral fusion of"^^string

Added

derived from ancestral fusion of comment "A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B."^^string
derived from ancestral fusion of label "has_fused_element"^^string
derived from ancestral fusion of definition "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat."^^string

developmentally contributes to `http://purl.obolibrary.org/obo/RO_0002255`

Added

developmentally contributes to has_obo_namespace "uberon"^^string
developmentally contributes to id "developmentally_contributes_to"^^string
developmentally contributes to database_cross_reference "RO:0002255"^^string
developmentally contributes to shorthand "developmentally_contributes_to"^^string
developmentally contributes to label "developmentally_contributes_to"^^string
ObjectProperty: developmentally contributes to
developmentally contributes to SubPropertyOf: has potential to developmentally contribute to
develops into o part of SubPropertyOf: developmentally contributes to

developmentally induced by `http://purl.obolibrary.org/obo/RO_0002256`

Removed

developmentally induced by label "developmentally induced by"^^string

Added

developmentally induced by label "developmentally_induced_by"^^string
developmentally induced by definition "t1 developmentally_induced_by t2 if there is a process of organ induction (GO:0001759) with t1 and t2 as interacting participants. t2 causes t1 to change its fate from a precursor tissue type T to T', where T' develops_from T."^^string
- database_cross_reference "GO:0001759"^^string
developmentally induced by comment "sources for developmentally_induced_by relationships in Uberon: Developmental Biology, Gilbert, 8th edition, figure 6.5(F)"^^string

developmentally preceded by `http://purl.obolibrary.org/obo/RO_0002258`

Added

developmentally preceded by shorthand "developmentally_preceded_by"^^string
developmentally preceded by id "developmentally_preceded_by"^^string
developmentally preceded by database_cross_reference "RO:0002258"^^string
developmentally preceded by has_obo_namespace "uberon"^^string
developmentally preceded by label "developmentally preceded by"^^string
ObjectProperty: developmentally preceded by

developmentally replaces `http://purl.obolibrary.org/obo/RO_0002285`

Removed

developmentally replaces label "developmentally replaces"^^string

Added

developmentally replaces label "developmentally_replaces"^^string

develops from part of `http://purl.obolibrary.org/obo/RO_0002225`

Removed

develops from part of label "develops from part of"^^string

Added

develops from part of label "develops_from_part_of"^^string
develops from part of SubPropertyOf: develops_from
directly develops from o part of SubPropertyOf: develops from part of

develops in `http://purl.obolibrary.org/obo/RO_0002226`

Removed

develops in label "develops in"^^string

Added

develops in label "develops_in"^^string
develops in comment "This relation take from EHDAA2 - precise semantics yet to be defined"^^string

develops into `http://purl.obolibrary.org/obo/RO_0002203`

Added

develops into label "develops_into"^^string
develops into has_obo_namespace "uberon"^^string
develops into shorthand "develops_into"^^string
develops into id "develops_into"^^string
develops into database_cross_reference "RO:0002203"^^string
ObjectProperty: develops into
develops into SubPropertyOf: has potential to develop into

develops_from `http://purl.obolibrary.org/obo/RO_0002202`

Removed

develops_from label "develops from"^^string

Added

develops_from label "develops_from"^^string
develops_from InverseOf develops into
Transitive: develops_from

directly develops from `http://purl.obolibrary.org/obo/RO_0002207`

Removed

directly develops from label "directly develops from"^^string

Added

directly develops from label "directly_develops_from"^^string

distal to `http://purl.obolibrary.org/obo/BSPO_0000097`

Removed

distal to label "distal to"^^string

Added

distal to definition "x distal_to y iff x is further along the proximo-distal axis than y, towards the appendage tip. A proximo-distal axis extends from tip of an appendage (distal) to where it joins the body (proximal)."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
distal to label "distal_to"^^string

distalmost part of `http://purl.obolibrary.org/obo/BSPO_0001108`

Removed

distalmost part of label "distalmost part of"^^string

Added

distalmost part of definition "X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
distalmost part of label "distalmost_part_of"^^string
distalmost part of SubPropertyOf: in distal side of

dorsal to `http://purl.obolibrary.org/obo/BSPO_0000098`

Removed

dorsal to label "dorsal to"^^string

Added

dorsal to definition "x dorsal_to y iff x is further along the dorso-ventral axis than y, towards the back. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
dorsal to label "dorsal_to"^^string
dorsal to InverseOf ventral to
Transitive: dorsal to

drains `http://purl.obolibrary.org/obo/RO_0002179`

Added

drains comment "source: Wikipedia"^^string
drains has_exact_synonym "drains blood from"^^string
drains has_exact_synonym "drains from"^^string
drains SubPropertyOf: connected to

ends `http://purl.obolibrary.org/obo/RO_0002229`

Added

ends definition "Relation between occurrents, shares an end boundary with."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
- database_cross_reference "Allen:starts"^^string
- database_cross_reference "ZFS:finishes"
ends has_exact_synonym "finishes"^^string
ends SubPropertyOf: part of

ends with `http://purl.obolibrary.org/obo/RO_0002230`

Added

ends with SubPropertyOf: has part
Transitive: ends with

existence ends during `http://purl.obolibrary.org/obo/RO_0002492`

Added

existence ends during SubPropertyOf: existence ends during or before
existence ends during o part of SubPropertyOf: existence ends during

existence ends during or before `http://purl.obolibrary.org/obo/RO_0002497`

Added

part of o existence ends during or before SubPropertyOf: existence ends during or before
existence ends during or before o part of SubPropertyOf: existence ends during or before
existence ends during or before o precedes SubPropertyOf: existence ends during or before
developmentally_succeeded_by o existence ends during or before SubPropertyOf: existence ends during or before
existence ends during or before o simultaneous with SubPropertyOf: existence ends during or before

existence ends with `http://purl.obolibrary.org/obo/RO_0002493`

Added

existence ends with definition "Relation between continuant and occurrent, such that c ceases to exist at the end of p."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
existence ends with SubPropertyOf: existence ends during

existence starts and ends during `http://purl.obolibrary.org/obo/RO_0002491`

Added

existence starts and ends during SubPropertyOf: existence starts during
existence starts and ends during SubPropertyOf: existence ends during

existence starts during `http://purl.obolibrary.org/obo/RO_0002488`

Added

existence starts during definition "Relation between continuant c and occurrent s, such that every instance of c comes into existing during some s."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
existence starts during has_exact_synonym "begins_to_exist_during"^^string
existence starts during SubPropertyOf: existence starts during or after
existence starts during o part of SubPropertyOf: existence starts during

existence starts during or after `http://purl.obolibrary.org/obo/RO_0002496`

Added

existence starts during or after o preceded by SubPropertyOf: existence starts during or after
existence starts during or after o simultaneous with SubPropertyOf: existence starts during or after
part of o existence starts during or after SubPropertyOf: existence starts during or after
existence starts during or after o part of SubPropertyOf: existence starts during or after
developmentally preceded by o existence starts during or after SubPropertyOf: existence starts during or after

existence starts with `http://purl.obolibrary.org/obo/RO_0002489`

Added

existence starts with definition "Relation between continuant and occurrent, such that c comes into existence at the start of p."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
existence starts with SubPropertyOf: existence starts during

has 2D boundary `http://purl.obolibrary.org/obo/RO_0002002`

Removed

has 2D boundary label "has 2D boundary"^^string

Added

has 2D boundary label "has boundary"^^string

has characteristic `http://purl.obolibrary.org/obo/RO_0000053`

Added

has characteristic label "bearer of"^^string
has characteristic has_obo_namespace "uberon"^^string
has characteristic shorthand "bearer_of"^^string
has characteristic id "bearer_of"^^string
has characteristic database_cross_reference "RO:0000053"^^string
ObjectProperty: has characteristic

has component `http://purl.obolibrary.org/obo/RO_0002180`

Added

has component SubPropertyOf: has part

has developmental contribution from `http://purl.obolibrary.org/obo/RO_0002254`

Added

has part o develops_from SubPropertyOf: has developmental contribution from

has member `http://purl.obolibrary.org/obo/RO_0002351`

Added

has member SubPropertyOf: has part

has muscle antagonist `http://purl.obolibrary.org/obo/RO_0002568`

Removed

has muscle antagonist label "has muscle antagonist"^^string

Added

has muscle antagonist see also dbpprop_antagonist
has muscle antagonist label "has_muscle_antagonist"^^string
has muscle antagonist definition "m1 has_muscle_antagonist m2 iff m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position."^^string
- database_cross_reference "Wikipedia:Antagonist_(muscle)"^^string

has muscle insertion `http://purl.obolibrary.org/obo/RO_0002373`

Removed

has muscle insertion label "has muscle insertion"^^string

Added

has muscle insertion see also dbpprop_insertion
has muscle insertion label "has_muscle_insertion"^^string
has muscle insertion definition "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone."^^string
- database_cross_reference "Wikipedia:Insertion_(anatomy)"^^string
has muscle insertion comment "The insertion is the point of attachment of a muscle that moves the most when the muscle shortens, or the most distal end of limb muscles"^^string
has muscle insertion SubPropertyOf: attached to

has muscle origin `http://purl.obolibrary.org/obo/RO_0002372`

Removed

has muscle origin label "has muscle origin"^^string

Added

has muscle origin definition "m has_muscle_origin s iff m is attaches_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to."^^string
- database_cross_reference "Wikipedia:Insertion_(anatomy)#Muscles"^^string
has muscle origin label "has_muscle_origin"^^string
has muscle origin comment "The origin is the end of a muscle that attaches to the more fixed part of the skeleton, which is the proximal end in limb muscles"^^string
has muscle origin see also dbpprop_origin
has muscle origin SubPropertyOf: attached to

has part `http://purl.obolibrary.org/obo/BFO_0000051`

Added

Transitive: has part

has potential to develop into `http://purl.obolibrary.org/obo/RO_0002387`

Added

has potential to develop into definition "x has the potential to develop into y iff x develops into y or if x is capable of developing into y."^^string

has potential to developmentally contribute to `http://purl.obolibrary.org/obo/RO_0002385`

Added

has potential to developmentally contribute to definition "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y."^^string

has potential to directly develop into `http://purl.obolibrary.org/obo/RO_0002388`

Added

has potential to directly develop into has_obo_namespace "uberon"^^string
has potential to directly develop into database_cross_reference "RO:0002388"^^string
has potential to directly develop into id "has_potential_to_directly_develop_into"^^string
has potential to directly develop into definition "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y."^^string
has potential to directly develop into label "has potential to directly develop into"^^string
has potential to directly develop into shorthand "has_potential_to_directly_develop_into"^^string
ObjectProperty: has potential to directly develop into

has quality `http://purl.obolibrary.org/obo/RO_0000086`

Added

has quality SubPropertyOf: has characteristic

has skeleton `http://purl.obolibrary.org/obo/RO_0002551`

Added

has skeleton has_related_synonym "has supporting framework"^^string
has skeleton definition "A relation between a subdivision of an organism and the single subdivision of skeleton that provides structural support for that subdivision."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
has skeleton has_related_synonym "has sekeletal support"^^string
has skeleton InverseOf skeleton of
has skeleton SubPropertyOf: has part

immediate transformation of `http://purl.obolibrary.org/obo/RO_0002495`

Added

immediate transformation of has_exact_synonym "direct_transformation_of"^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
immediate transformation of has_exact_synonym "immediately transforms from"^^string
- database_cross_reference "SIO:000658"^^string
immediate transformation of see also SIO_000658
immediate transformation of SubPropertyOf: transformation of

immediately anterior to `http://purl.obolibrary.org/obo/BSPO_0015009`

Removed

immediately anterior to label "immediately anterior to"^^string

Added

immediately anterior to label "immediately_anterior_to"^^string
immediately anterior to SubPropertyOf: anterior to
immediately anterior to SubPropertyOf: adjacent to

immediately deep to `http://purl.obolibrary.org/obo/BSPO_0001107`

Removed

immediately deep to label "immediately deep to"^^string

Added

immediately deep to label "immediately_deep_to"^^string
immediately deep to definition "This relation holds when both the deep_to and ajdacent_to relationship similarly hold."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
immediately deep to SubPropertyOf: adjacent to
immediately deep to SubPropertyOf: deep to

immediately posterior to `http://purl.obolibrary.org/obo/BSPO_0015012`

Removed

immediately posterior to label "immediately posterior to"^^string

Added

immediately posterior to label "immediately_posterior_to"^^string
immediately posterior to SubPropertyOf: posterior to

immediately preceded by `http://purl.obolibrary.org/obo/RO_0002087`

Removed

immediately preceded by label "immediately preceded by"^^string

Added

immediately preceded by has_exact_synonym "starts_at_end_of"^^string
immediately preceded by definition "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)."^^string
immediately preceded by label "immediately_preceded_by"^^string
immediately preceded by external_definition "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]."^^string
- source "SIO:000251"^^string
immediately preceded by has_exact_synonym "directly preceded by"^^string
immediately preceded by has_exact_synonym "is directly preceded by"^^string
immediately preceded by has_exact_synonym "is immediately preceded by"^^string
- database_cross_reference "SIO:000251"^^string
immediately preceded by see also SIO_000251
immediately preceded by SubPropertyOf: preceded by

immediately superficial to `http://purl.obolibrary.org/obo/BSPO_0015014`

Removed

immediately superficial to label "immediately superficial to"^^string

Added

immediately superficial to label "immediately_superficial_to"^^string
immediately superficial to SubPropertyOf: superficial to

in anterior side of `http://purl.obolibrary.org/obo/BSPO_0000123`

Removed

in anterior side of label "in anterior side of"^^string

Added

in anterior side of label "in_anterior_side_of"^^string
in anterior side of definition "X anterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the anterior portion."^^string
- database_cross_reference "BSPO:PATO_mtg_2009"^^string
in anterior side of SubPropertyOf: part of

in deep part of `http://purl.obolibrary.org/obo/BSPO_0001101`

Removed

in deep part of label "in deep part of"^^string

Added

in deep part of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
in deep part of label "in_deep_part_of"^^string
in deep part of SubPropertyOf: part of

in distal side of `http://purl.obolibrary.org/obo/BSPO_0000125`

Removed

in distal side of label "in distal side of"^^string

Added

in distal side of definition "X distal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the distal portion."^^string
- database_cross_reference "BSPO:PATO_mtg_2009"^^string
in distal side of label "in_distal_side_of"^^string
in distal side of SubPropertyOf: part of

in dorsal side of `http://purl.obolibrary.org/obo/BSPO_0015101`

Removed

in dorsal side of label "in dorsal side of"^^string

Added

in dorsal side of label "in_dorsal_side_of"^^string
in dorsal side of SubPropertyOf: part of

in lateral side of `http://purl.obolibrary.org/obo/BSPO_0000126`

Removed

in lateral side of label "in lateral side of"^^string

Added

in lateral side of label "in_lateral_side_of"^^string
in lateral side of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
in lateral side of definition "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
in lateral side of SubPropertyOf: part of

in left side of `http://purl.obolibrary.org/obo/BSPO_0000120`

Removed

in left side of label "in left side of"^^string

Added

in left side of label "in_left_side_of"^^string
in left side of definition "X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion."^^string
- database_cross_reference "BSPO:PATO_mtg_2009"^^string
in left side of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
in left side of SubPropertyOf: in lateral side of

in posterior side of `http://purl.obolibrary.org/obo/BSPO_0000122`

Removed

in posterior side of label "in posterior side of"^^string

Added

in posterior side of definition "X posterior_side_of Y <=> if Y is subdivided into two anterior and posterior portions, X is part_of the posterior portion."^^string
- database_cross_reference "BSPO:PATO_mtg_2009"^^string
in posterior side of label "in_posterior_side_of"^^string
in posterior side of SubPropertyOf: part of

in proximal side of `http://purl.obolibrary.org/obo/BSPO_0000124`

Removed

in proximal side of label "in proximal side of"^^string

Added

in proximal side of definition "X proximal_side_of Y <=> if Y is subdivided into distal and proximal portions, X is part_of the proximal portion."^^string
- database_cross_reference "BSPO:PATO_mtg_2009"^^string
in proximal side of label "in_proximal_side_of"^^string
in proximal side of InverseOf in distal side of
in proximal side of SubPropertyOf: part of

in right side of `http://purl.obolibrary.org/obo/BSPO_0000121`

Removed

in right side of label "in right side of"^^string

Added

in right side of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
in right side of definition "X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion."^^string
- database_cross_reference "BSPO:PATO_mtg_2009"^^string
in right side of label "in_right_side_of"^^string
in right side of SubPropertyOf: in lateral side of

in superficial part of `http://purl.obolibrary.org/obo/BSPO_0001100`

Removed

in superficial part of label "in superficial part of"^^string

Added

in superficial part of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
in superficial part of label "in_superficial_part_of"^^string
in superficial part of SubPropertyOf: part of

in taxon `http://purl.obolibrary.org/obo/RO_0002162`

Added

has developmental contribution from o in taxon SubPropertyOf: in taxon
part of o in taxon SubPropertyOf: in taxon
develops_from o in taxon SubPropertyOf: in taxon

in ventral side of `http://purl.obolibrary.org/obo/BSPO_0015102`

Removed

in ventral side of label "in ventral side of"^^string

Added

in ventral side of label "in_ventral_side_of"^^string
in ventral side of SubPropertyOf: part of

innervated_by `http://purl.obolibrary.org/obo/RO_0002005`

Added

innervated_by see also dbprop_nerve
innervated_by comment "http://code.google.com/p/obo-relations/issues/detail?id=6"^^[string](http://www.w3.org/2001/XMLSchema#string)
innervated_by has_exact_synonym "nerve supply"^^string
- database_cross_reference "FMA:85999"^^string
innervated_by see also FMA_85999
innervated_by InverseOf innervates

innervates `http://purl.obolibrary.org/obo/RO_0002134`

Added

input of `http://purl.obolibrary.org/obo/RO_0002352`

Added

input of SubPropertyOf: functionally related to

intersects midsagittal plane of `http://purl.obolibrary.org/obo/BSPO_0005001`

Removed

intersects midsagittal plane of label "intersects midsagittal plane of"^^string

Added

intersects midsagittal plane of label "intersects_midsagittal_plane_of"^^string
intersects midsagittal plane of definition "X intersects_median_plane of iff X crosses the midine plane of Y."^^string
intersects midsagittal plane of SubPropertyOf: part of

located in `http://purl.obolibrary.org/obo/RO_0001025`

Removed

located in label "located in"^^string

Added

located in label "located_in"^^string

location of `http://purl.obolibrary.org/obo/RO_0001015`

Removed

location of label "location of"^^string

Added

location of label "location_of"^^string

lumen of `http://purl.obolibrary.org/obo/RO_0002571`

Added

lumen of SubPropertyOf: part of

luminal space of `http://purl.obolibrary.org/obo/RO_0002572`

Added

luminal space of SubPropertyOf: part of

member of `http://purl.obolibrary.org/obo/RO_0002350`

Added

member of shorthand "member_of"^^string
member of database_cross_reference "RO:0002350"^^string
member of label "member of"^^string
member of id "member_of"^^string
member of has_obo_namespace "uberon"^^string
ObjectProperty: member of
member of InverseOf has member
member of SubPropertyOf: part of

only in taxon `http://purl.obolibrary.org/obo/RO_0002160`

Removed

only in taxon label "only in taxon"^^string

Added

only in taxon label "only_in_taxon"^^string
only in taxon definition "S only_in_taxon T iff: S SubClassOf in_taxon only T."^^string
- database_cross_reference "PMID:20973947"^^string
only in taxon SubPropertyOf: in taxon

output of `http://purl.obolibrary.org/obo/RO_0002353`

Added

output of SubPropertyOf: functionally related to

overlaps `http://purl.obolibrary.org/obo/RO_0002131`

Added

overlaps IAO_0000424 "BFO_0000051 some (BFO_0000050 some ?Y)"^^string

part of `http://purl.obolibrary.org/obo/BFO_0000050`

Added

part of InverseOf has part
Transitive: part of

part of structure that is capable of `http://purl.obolibrary.org/obo/RO_0002329`

Added

part of structure that is capable of database_cross_reference "RO:0002329"^^string
part of structure that is capable of id "part_of_structure_that_is_capable_of"^^string
part of structure that is capable of label "part of structure that is capable of"^^string
part of structure that is capable of shorthand "part_of_structure_that_is_capable_of"^^string
part of structure that is capable of has_obo_namespace "uberon"^^string
ObjectProperty: part of structure that is capable of
part of structure that is capable of SubPropertyOf: functionally related to
part of o capable of SubPropertyOf: part of structure that is capable of

postaxialmost part of `http://purl.obolibrary.org/obo/BSPO_0001115`

Removed

postaxialmost part of label "postaxialmost part of"^^string

Added

postaxialmost part of label "postaxialmost_part_of"^^string
postaxialmost part of SubPropertyOf: part of

posterior to `http://purl.obolibrary.org/obo/BSPO_0000099`

Removed

posterior to label "posterior to"^^string

Added

posterior to has_narrow_synonym "caudal_to"^^string
posterior to label "posterior_to"^^string
posterior to definition "x posterior_to y iff x is further along the antero-posterior axis than y, towards the body/tail. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
Transitive: posterior to

preaxialmost part of `http://purl.obolibrary.org/obo/BSPO_0001113`

Removed

preaxialmost part of label "preaxialmost part of"^^string

Added

preaxialmost part of label "preaxialmost_part_of"^^string
preaxialmost part of SubPropertyOf: part of

preceded by `http://purl.obolibrary.org/obo/BFO_0000062`

Removed

preceded by label "preceded by"^^string

Added

preceded by has_exact_synonym "takes place after"^^string
- database_cross_reference "Allen:precedes"^^string
preceded by has_exact_synonym "is preceded by"^^string
- database_cross_reference "SIO:000249"^^string
preceded by definition "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)."^^string
preceded by label "preceded_by"^^string
Transitive: preceded by

precedes `http://purl.obolibrary.org/obo/BFO_0000063`

Added

Transitive: precedes

produced by `http://purl.obolibrary.org/obo/RO_0003001`

Removed

produced by label "produced by"^^string

Added

produced by label "produced_by"^^string

proximal to `http://purl.obolibrary.org/obo/BSPO_0000100`

Removed

proximal to label "proximal to"^^string

Added

proximal to label "proximal_to"^^string
proximal to definition "x proximal_to y iff x is closer to the point of attachment with the body than y."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)

proximalmost part of `http://purl.obolibrary.org/obo/BSPO_0001106`

Removed

proximalmost part of label "proximalmost part of"^^string

Added

proximalmost part of label "proximalmost_part_of"^^string
proximalmost part of definition "X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
proximalmost part of SubPropertyOf: in proximal side of

serially homologous to `http://purl.obolibrary.org/obo/RO_0002159`

Removed

serially homologous to label "serially homologous to"^^string

Added

serially homologous to label "serially_homologous_to"^^string

shares ancestor with `http://purl.obolibrary.org/obo/RO_0002158`

Removed

shares ancestor with label "shares ancestor with"^^string

Added

shares ancestor with label "homologous_to"^^string

simultaneous with `http://purl.obolibrary.org/obo/RO_0002082`

Removed

simultaneous with label "simultaneous with"^^string

Added

simultaneous with definition "Relation between occurrents, shares start and end boundaries."^^string
- database_cross_reference "Allen:is_equal_to"^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
simultaneous with label "simultaneous_with"^^string
simultaneous with has_exact_synonym "coincides_with"^^string
simultaneous with has_exact_synonym "is_equal_to"^^string

skeleton of `http://purl.obolibrary.org/obo/RO_0002576`

Added

skeleton of SubPropertyOf: part of

starts `http://purl.obolibrary.org/obo/RO_0002223`

Added

starts definition "Relation between occurrents, shares a start boundary with."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
- database_cross_reference "Allen:starts"^^string
starts InverseOf starts with
starts SubPropertyOf: part of

starts with `http://purl.obolibrary.org/obo/RO_0002224`

Added

starts with SubPropertyOf: has part
Transitive: starts with

superficial to `http://purl.obolibrary.org/obo/BSPO_0000108`

Removed

superficial to label "superficial to"^^string

Added

superficial to label "superficial_to"^^string

supplies `http://purl.obolibrary.org/obo/RO_0002178`

Added

supplies see also FMA_86003
supplies comment "source: FMA"^^string
supplies has_exact_synonym "arterial supply of"^^string
- database_cross_reference "FMA:86003"^^string
supplies definition "relation between an artery and the structure is supplies with blood."^^string
supplies SubPropertyOf: connected to

surrounded by `http://purl.obolibrary.org/obo/RO_0002219`

Removed

surrounded by label "surrounded by"^^string

Added

surrounded by label "surrounded_by"^^string
surrounded by definition "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
surrounded by InverseOf surrounds

surrounds `http://purl.obolibrary.org/obo/RO_0002221`

Added

surrounds definition "inverse of surrounded_by."^^string
- database_cross_reference "https://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)

transformation of `http://purl.obolibrary.org/obo/RO_0002494`

Added

transformation of see also SIO_000657
transformation of has_exact_synonym "transforms from"^^string
- database_cross_reference "SIO:000657"^^string
transformation of SubPropertyOf: develops_from
Transitive: transformation of

tributary of `http://purl.obolibrary.org/obo/RO_0002376`

Removed

tributary of label "tributary of"^^string

Added

tributary of label "tributary_of"^^string
tributary of has_related_synonym "drains into"^^string
- database_cross_reference "dbpowl:drainsTo"^^string

ventral to `http://purl.obolibrary.org/obo/BSPO_0000102`

Removed

ventral to label "ventral to"^^string

Added

ventral to label "ventral_to"^^string
ventral to definition "x ventral_to y iff x is further along the dorso-ventral axis than y, towards the front. A dorso-ventral axis is an axis that bisects an organism from back (e.g. spinal column) to front (e.g. belly)."^^string
- database_cross_reference "http://orcid.org/0000-0002-6601-2165"^^[string](http://www.w3.org/2001/XMLSchema#string)
Transitive: ventral to

github-actions · 2022-05-04T12:10:47Z

Here's a diff of your human-view

# Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/uberon/subsets/human-view.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-05-04/subsets/human-view.owl
Loaded from: file:/work/src/ontology/../../master/src/ontology/subsets/human-view.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/uberon/subsets/human-view.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-05-04/subsets/human-view.owl
Loaded from: file:/work/src/ontology/subsets/human-view.owl

Ontology imports

Ontology annotations

2D boundary of `http://purl.obolibrary.org/obo/RO_0002000`

Removed

2D boundary of definition "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity"@en
2D boundary of id "boundary_of"
2D boundary of database_cross_reference "RO:0002000"
2D boundary of shorthand "boundary_of"
2D boundary of has_obo_namespace "uberon"
2D boundary of label "2D boundary of"@en
ObjectProperty: 2D boundary of
2D boundary of InverseOf has 2D boundary

IAO_isReversiblePropertyChain `http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain`

Removed

AnnotationProperty: IAO_isReversiblePropertyChain

_:genid2147483648

Removed

_:genid2147483648 database_cross_reference "GO:0021728"

_:genid2147483649

Removed

_:genid2147483649 database_cross_reference "GO:0003226"

_:genid2147483650

Removed

_:genid2147483650 database_cross_reference "MP:0010002"

_:genid2147483651

Removed

_:genid2147483651 database_cross_reference "MP:0009996"

_:genid2147483652

Removed

_:genid2147483652 database_cross_reference "GO:0021729"

_:genid2147483653

Removed

_:genid2147483653 database_cross_reference "GO:0072165"

_:genid2147483654

Removed

_:genid2147483654 database_cross_reference "BIRNLEX:1734"

_:genid2147483655

Removed

_:genid2147483655 database_cross_reference "FlyBase:FBrf0007733"
_:genid2147483655 database_cross_reference "FlyBase:FBrf0064792"

_:genid2147483656

Removed

_:genid2147483656 database_cross_reference "FlyBase:FBrf0002482"
_:genid2147483656 database_cross_reference "FlyBase:FBrf0007735"
_:genid2147483656 database_cross_reference "FlyBase:FBrf0034076"
_:genid2147483656 database_cross_reference "FlyBase:FBrf0007196"

_:genid2147483657

Removed

_:genid2147483657 database_cross_reference "HP:0005289"

_:genid2147483658

Removed

_:genid2147483658 database_cross_reference "ISBN:0073040584"

_:genid2147483659

Removed

_:genid2147483659 database_cross_reference "FBC:VH"
_:genid2147483659 database_cross_reference "FBC:DOS"

_:genid2147483660

Removed

_:genid2147483660 database_cross_reference "GO:0003285"

_:genid2147483661

Removed

_:genid2147483661 database_cross_reference "FlyBase:FBrf0006943"

_:genid2147483662

Removed

_:genid2147483662 database_cross_reference "ISBN:0073040584"

_:genid2147483663

Removed

_:genid2147483663 database_cross_reference "GO:0060682"

_:genid2147483664

Removed

_:genid2147483664 database_cross_reference "FBC:DOS"

_:genid2147483665

Removed

_:genid2147483665 database_cross_reference "FBC:DOS"

_:genid2147483666

Removed

_:genid2147483666 database_cross_reference "BIRNLEX:1732"

_:genid2147483667

Removed

_:genid2147483667 database_cross_reference "GO:0061249"

_:genid2147483668

Removed

_:genid2147483668 database_cross_reference "MP:0009994"

_:genid2147483669

Removed

_:genid2147483669 database_cross_reference "GO:0003224"

_:genid2147483670

Removed

_:genid2147483670 database_cross_reference "HP:0003350"

_:genid2147483671

Removed

_:genid2147483671 database_cross_reference "FlyBase:FBrf0089570"

_:genid2147483672

Removed

_:genid2147483672 database_cross_reference "MP:0009364"

_:genid2147483673

Removed

_:genid2147483673 database_cross_reference "FBC:DOS"
_:genid2147483673 database_cross_reference "FBC:VH"

_:genid2147483674

Removed

_:genid2147483674 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483675

Removed

_:genid2147483675 database_cross_reference "FBC:DOS"

_:genid2147483676

Removed

_:genid2147483676 database_cross_reference "BIRNLEX:1755"

_:genid2147483677

Removed

_:genid2147483677 database_cross_reference "MP:0009993"

_:genid2147483678

Removed

_:genid2147483678 database_cross_reference "GO:dph"
_:genid2147483678 database_cross_reference "ZFIN:cvs"

_:genid2147483679

Removed

_:genid2147483679 database_cross_reference "GO:0021751"

_:genid2147483680

Removed

_:genid2147483680 database_cross_reference "MP:0009989"

_:genid2147483681

Removed

_:genid2147483681 database_cross_reference "UBERON:CL_meeting_20110725"

_:genid2147483682

Removed

_:genid2147483682 database_cross_reference "ISBN:0073040584"

_:genid2147483683

Removed

_:genid2147483683 database_cross_reference "HP:0000606"

_:genid2147483684

Removed

_:genid2147483684 database_cross_reference "FBC:VH"

_:genid2147483685

Removed

_:genid2147483685 database_cross_reference "MP:0010003"

_:genid2147483686

Removed

_:genid2147483686 database_cross_reference "GO:0072003"

_:genid2147483687

Removed

_:genid2147483687 database_cross_reference "PHENOSCAPE:Wasila"

_:genid2147483688

Removed

_:genid2147483688 database_cross_reference "FBC:VH"

_:genid2147483689

Removed

_:genid2147483689 database_cross_reference "FBC:DOS"

_:genid2147483690

Removed

_:genid2147483690 database_cross_reference "HP:0003832"

_:genid2147483691

Removed

_:genid2147483691 database_cross_reference "MP:0009997"

_:genid2147483692

Removed

_:genid2147483692 database_cross_reference "FBC:DOS"
_:genid2147483692 database_cross_reference "FBC:VH"

_:genid2147483693

Removed

_:genid2147483693 database_cross_reference "ISBN:0073040584"

_:genid2147483694

Removed

_:genid2147483694 database_cross_reference "HP:0000864"

_:genid2147483695

Removed

_:genid2147483695 database_cross_reference "GO:0061214"

_:genid2147483696

Removed

_:genid2147483696 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483697

Removed

_:genid2147483697 database_cross_reference "GO:0003227"

_:genid2147483698

Removed

_:genid2147483698 database_cross_reference "GO:0003291"

_:genid2147483699

Removed

_:genid2147483699 database_cross_reference "MP:0009999"

_:genid2147483700

Removed

_:genid2147483700 database_cross_reference "GO:0003225"

_:genid2147483701

Removed

_:genid2147483701 database_cross_reference "MP:0009988"

_:genid2147483702

Removed

_:genid2147483702 database_cross_reference "EFO:0000240"

_:genid2147483703

Removed

_:genid2147483703 database_cross_reference "GO:0072166"

_:genid2147483704

Removed

_:genid2147483704 database_cross_reference "FBC:VH"

_:genid2147483705

Removed

_:genid2147483705 database_cross_reference "GO:0021729"
_:genid2147483705 database_cross_reference "GO_REF:0000021"

_:genid2147483706

Removed

_:genid2147483706 database_cross_reference "MP:0009990"

_:genid2147483707

Removed

_:genid2147483707 database_cross_reference "FBC:VH"

_:genid2147483708

Removed

_:genid2147483708 database_cross_reference "MP:0009946"

_:genid2147483709

Removed

_:genid2147483709 database_cross_reference "PMCID:PMC2093943"

_:genid2147483710

Added

_:genid2147483710 database_cross_reference "GO:dph"
_:genid2147483710 database_cross_reference "ZFIN:cvs"

_:genid2147483711

Added

_:genid2147483711 database_cross_reference "ISBN:0073040584"

_:genid2147483712

Added

_:genid2147483712 database_cross_reference "GO:0021728"

_:genid2147483713

Added

_:genid2147483713 database_cross_reference "GO:0003285"

_:genid2147483714

Added

_:genid2147483714 database_cross_reference "GO:0072166"

_:genid2147483715

Added

_:genid2147483715 database_cross_reference "FBC:VH"
_:genid2147483715 database_cross_reference "FBC:DOS"

_:genid2147483716

Added

_:genid2147483716 database_cross_reference "MP:0009999"

_:genid2147483717

Added

_:genid2147483717 database_cross_reference "GO:0072003"

_:genid2147483718

Added

_:genid2147483718 database_cross_reference "MP:0009988"

_:genid2147483719

Added

_:genid2147483719 database_cross_reference "EFO:0000240"

_:genid2147483720

Added

_:genid2147483720 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483721

Added

_:genid2147483721 database_cross_reference "HP:0003350"

_:genid2147483722

Added

_:genid2147483722 database_cross_reference "HP:0005289"

_:genid2147483723

Added

_:genid2147483723 database_cross_reference "HP:0000606"

_:genid2147483724

Added

_:genid2147483724 database_cross_reference "MP:0009993"

_:genid2147483725

Added

_:genid2147483725 database_cross_reference "MP:0009364"

_:genid2147483726

Added

_:genid2147483726 database_cross_reference "UBERON:CL_meeting_20110725"

_:genid2147483727

Added

_:genid2147483727 database_cross_reference "GO:0021729"
_:genid2147483727 database_cross_reference "GO_REF:0000021"

_:genid2147483728

Added

_:genid2147483728 database_cross_reference "GO:0003224"

_:genid2147483729

Added

_:genid2147483729 database_cross_reference "FlyBase:FBrf0064792"
_:genid2147483729 database_cross_reference "FlyBase:FBrf0007733"

_:genid2147483730

Added

_:genid2147483730 database_cross_reference "MP:0010003"

_:genid2147483731

Added

_:genid2147483731 database_cross_reference "FBC:VH"

_:genid2147483732

Added

_:genid2147483732 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483733

Added

_:genid2147483733 database_cross_reference "GO:0003227"

_:genid2147483734

Added

_:genid2147483734 database_cross_reference "HP:0003832"

_:genid2147483735

Added

_:genid2147483735 database_cross_reference "GO:0061249"

_:genid2147483736

Added

_:genid2147483736 database_cross_reference "FlyBase:FBrf0089570"

_:genid2147483737

Added

_:genid2147483737 database_cross_reference "MP:0009990"

_:genid2147483738

Added

_:genid2147483738 database_cross_reference "ISBN:0073040584"

_:genid2147483739

Added

_:genid2147483739 database_cross_reference "FBC:DOS"
_:genid2147483739 database_cross_reference "FBC:VH"

_:genid2147483740

Added

_:genid2147483740 database_cross_reference "PHENOSCAPE:Wasila"

_:genid2147483741

Added

_:genid2147483741 database_cross_reference "FBC:DOS"

_:genid2147483742

Added

_:genid2147483742 database_cross_reference "GO:0072165"

_:genid2147483743

Added

_:genid2147483743 database_cross_reference "FBC:DOS"

_:genid2147483744

Added

_:genid2147483744 database_cross_reference "GO:0003226"

_:genid2147483745

Added

_:genid2147483745 database_cross_reference "GO:0003291"

_:genid2147483746

Added

_:genid2147483746 database_cross_reference "FBC:VH"

_:genid2147483747

Added

_:genid2147483747 database_cross_reference "MP:0009946"

_:genid2147483748

Added

_:genid2147483748 database_cross_reference "BIRNLEX:1755"

_:genid2147483749

Added

_:genid2147483749 database_cross_reference "ISBN:0073040584"

_:genid2147483750

Added

_:genid2147483750 database_cross_reference "BIRNLEX:1732"

_:genid2147483751

Added

_:genid2147483751 database_cross_reference "FlyBase:FBrf0007196"
_:genid2147483751 database_cross_reference "FlyBase:FBrf0002482"
_:genid2147483751 database_cross_reference "FlyBase:FBrf0007735"
_:genid2147483751 database_cross_reference "FlyBase:FBrf0034076"

_:genid2147483752

Added

_:genid2147483752 database_cross_reference "FBC:DOS"

_:genid2147483753

Added

_:genid2147483753 database_cross_reference "FBC:VH"

_:genid2147483754

Added

_:genid2147483754 database_cross_reference "MP:0009989"

_:genid2147483755

Added

_:genid2147483755 database_cross_reference "GO:0021729"

_:genid2147483756

Added

_:genid2147483756 database_cross_reference "MP:0010002"

_:genid2147483757

Added

_:genid2147483757 database_cross_reference "ISBN:0073040584"

_:genid2147483758

Added

_:genid2147483758 database_cross_reference "PMCID:PMC2093943"

_:genid2147483759

Added

_:genid2147483759 database_cross_reference "GO:0003225"

_:genid2147483760

Added

_:genid2147483760 database_cross_reference "MP:0009997"

_:genid2147483761

Added

_:genid2147483761 database_cross_reference "FBC:VH"

_:genid2147483762

Added

_:genid2147483762 database_cross_reference "MP:0009996"

_:genid2147483763

Added

_:genid2147483763 database_cross_reference "MP:0009994"

_:genid2147483764

Added

_:genid2147483764 database_cross_reference "FBC:DOS"

_:genid2147483765

Added

_:genid2147483765 database_cross_reference "HP:0000864"

_:genid2147483766

Added

_:genid2147483766 database_cross_reference "FlyBase:FBrf0006943"

_:genid2147483767

Added

_:genid2147483767 database_cross_reference "BIRNLEX:1734"

_:genid2147483768

Added

_:genid2147483768 database_cross_reference "GO:0060682"

_:genid2147483769

Added

_:genid2147483769 database_cross_reference "FBC:VH"
_:genid2147483769 database_cross_reference "FBC:DOS"

_:genid2147483770

Added

_:genid2147483770 database_cross_reference "GO:0061214"

_:genid2147483771

Added

_:genid2147483771 database_cross_reference "GO:0021751"

aboral to `http://purl.obolibrary.org/obo/BSPO_0015202`

Removed

aboral to label "aboral_to"

adjacent to `http://purl.obolibrary.org/obo/RO_0002220`

Removed

adjacent to definition "x adjacent_to y iff: x and y share a boundary."

anterior_to `http://purl.obolibrary.org/obo/BSPO_0000096`

Removed

anterior_to definition "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer."
- database_cross_reference 0000-0002-6601-2165
anterior_to contributor 0000-0002-6601-2165

attached to part of `http://purl.obolibrary.org/obo/RO_0002177`

Removed

attached to o part_of SubPropertyOf: attached to part of
- IAO_isReversiblePropertyChain "true"

Added

attached to o part_of SubPropertyOf: attached to part of

child nucleus of `http://purl.obolibrary.org/obo/RO_0002476`

Removed

child nucleus of id "child_nucleus_of"
child nucleus of shorthand "child_nucleus_of"
child nucleus of definition "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d"
child nucleus of database_cross_reference "RO:0002476"
child nucleus of label "child nucleus of"
child nucleus of has_obo_namespace "uberon"
ObjectProperty: child nucleus of
child nucleus of SubPropertyOf: developmentally preceded by

child nucleus of in hermaphrodite `http://purl.obolibrary.org/obo/RO_0002477`

Removed

child nucleus of in hermaphrodite definition "A child nucleus relationship in which the cells are part of a hermaphroditic organism"
child nucleus of in hermaphrodite label "child nucleus of in hermaphrodite"
child nucleus of in hermaphrodite id "child_nucleus_of_in_hermaphrodite"
child nucleus of in hermaphrodite database_cross_reference "RO:0002477"
child nucleus of in hermaphrodite shorthand "child_nucleus_of_in_hermaphrodite"
child nucleus of in hermaphrodite has_obo_namespace "uberon"
ObjectProperty: child nucleus of in hermaphrodite
child nucleus of in hermaphrodite SubPropertyOf: child nucleus of

child nucleus of in male `http://purl.obolibrary.org/obo/RO_0002478`

Removed

child nucleus of in male label "child nucleus of in male"
child nucleus of in male has_obo_namespace "uberon"
child nucleus of in male id "child_nucleus_of_in_male"
child nucleus of in male definition "A child nucleus relationship in which the cells are part of a male organism"
child nucleus of in male database_cross_reference "RO:0002478"
child nucleus of in male shorthand "child_nucleus_of_in_male"
ObjectProperty: child nucleus of in male
child nucleus of in male SubPropertyOf: child nucleus of

composed primarily of `http://purl.obolibrary.org/obo/RO_0002473`

Removed

composed primarily of definition "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y."

confers advantage in `http://purl.obolibrary.org/obo/RO_0002322`

Removed

confers advantage in has_narrow_synonym "adapted_for"

derived from ancestral fusion of `http://purl.obolibrary.org/obo/RO_0002374`

Removed

derived from ancestral fusion of definition "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat."
derived from ancestral fusion of comment "A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B."

developmentally contributes to `http://purl.obolibrary.org/obo/RO_0002255`

Removed

developmentally contributes to label "developmentally contributes to"@en
developmentally contributes to IAO_0000114 IAO_0000125
developmentally contributes to in_subset RO_0002259
developmentally contributes to shorthand "developmentally_contributes_to"
developmentally contributes to definition "inverse of has developmental contribution from"
developmentally contributes to IAO_0000117 "Chris Mungall"
developmentally contributes to id "developmentally_contributes_to"
developmentally contributes to database_cross_reference "RO:0002255"
developmentally contributes to has_obo_namespace "uberon"
ObjectProperty: developmentally contributes to
developmentally contributes to SubPropertyOf: has potential to developmentally contribute to
develops into o part_of SubPropertyOf: developmentally contributes to

developmentally induced by `http://purl.obolibrary.org/obo/RO_0002256`

Removed

developmentally induced by SubPropertyOf: developmentally preceded by

developmentally preceded by `http://purl.obolibrary.org/obo/RO_0002258`

Removed

developmentally preceded by database_cross_reference "RO:0002258"
developmentally preceded by IAO_0000117 "Chris Mungall"
developmentally preceded by shorthand "developmentally_preceded_by"
developmentally preceded by label "developmentally preceded by"@en
developmentally preceded by IAO_0000114 IAO_0000125
developmentally preceded by comment "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from"
developmentally preceded by editor note false
developmentally preceded by curator notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one"
developmentally preceded by has_obo_namespace "uberon"
developmentally preceded by id "developmentally_preceded_by"
developmentally preceded by definition "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p"
ObjectProperty: developmentally preceded by

developmentally replaces `http://purl.obolibrary.org/obo/RO_0002285`

Removed

developmentally replaces SubPropertyOf: developmentally preceded by

develops from `http://purl.obolibrary.org/obo/RO_0002202`

Removed

develops from InverseOf develops into
develops from SubPropertyOf: developmentally preceded by

develops in `http://purl.obolibrary.org/obo/RO_0002226`

Removed

develops in comment "This relation take from EHDAA2 - precise semantics yet to be defined"
develops in SubPropertyOf: developmentally preceded by

develops into `http://purl.obolibrary.org/obo/RO_0002203`

Removed

develops into database_cross_reference "RO:0002203"
develops into in_subset RO_0002259
develops into label "develops into"@en
develops into has_obo_namespace "uberon"
develops into IAO_0000114 IAO_0000125
develops into IAO_0000117 "David Osumi-Sutherland"@en
develops into definition "inverse of develops from"
develops into IAO_0000117 "Chris Mungall"@en
develops into id "develops_into"
develops into shorthand "develops_into"
develops into IAO_0000117 "Terry Meehan"@en
ObjectProperty: develops into
develops into SubPropertyOf: has potential to develop into
develops into SubPropertyOf: has potential to directly develop into
Transitive: develops into

distalmost_part_of `http://purl.obolibrary.org/obo/BSPO_0001108`

Removed

distalmost_part_of definition "X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y."
- database_cross_reference 0000-0002-6601-2165

existence starts during or after `http://purl.obolibrary.org/obo/RO_0002496`

Removed

developmentally preceded by o existence starts during or after SubPropertyOf: existence starts during or after

expand expression to `http://purl.obolibrary.org/obo/IAO_0000424`

Removed

expand expression to label "expand expression to"

has characteristic `http://purl.obolibrary.org/obo/RO_0000053`

Removed

has characteristic example of usage "this apple is bearer of this red color"@en
has characteristic RO_0001900 RO_0001901
has characteristic definition "Inverse of characteristic_of"@en
has characteristic label "has characteristic"@en
has characteristic database_cross_reference "RO:0000053"
has characteristic has_obo_namespace "uberon"
has characteristic definition "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en
has characteristic example of usage "this vase is bearer of this fragility"@en
has characteristic id "bearer_of"
has characteristic IAO_0000118 "bearer_of"@en
has characteristic IAO_0000111 "bearer of"@en
has characteristic shorthand "bearer_of"
has characteristic editor note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en
has characteristic IAO_0000118 "is bearer of"@en
ObjectProperty: has characteristic
InverseFunctional: has characteristic

has developmental contribution from `http://purl.obolibrary.org/obo/RO_0002254`

Removed

has developmental contribution from InverseOf developmentally contributes to
has developmental contribution from SubPropertyOf: developmentally preceded by

has muscle antagonist `http://purl.obolibrary.org/obo/RO_0002568`

Removed

has muscle antagonist definition "m1 has_muscle_antagonist m2 iff m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position."
- database_cross_reference Antagonist_(muscle)
has muscle antagonist see also dbpprop_antagonist

has muscle insertion `http://purl.obolibrary.org/obo/RO_0002373`

Removed

has muscle insertion see also dbpprop_insertion
has muscle insertion comment "The insertion is the point of attachment of a muscle that moves the most when the muscle shortens, or the most distal end of limb muscles"
has muscle insertion definition "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone."
- database_cross_reference Insertion_(anatomy)

has muscle origin `http://purl.obolibrary.org/obo/RO_0002372`

Removed

has muscle origin definition "m has_muscle_origin s iff m is attaches_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to."
- database_cross_reference Muscles
has muscle origin see also dbpprop_origin
has muscle origin comment "The origin is the end of a muscle that attaches to the more fixed part of the skeleton, which is the proximal end in limb muscles"

has potential to develop into `http://purl.obolibrary.org/obo/RO_0002387`

Removed

has potential to develop into definition "x has the potential to develop into y iff x develops into y or if x is capable of developing into y."

has potential to developmentally contribute to `http://purl.obolibrary.org/obo/RO_0002385`

Removed

has potential to developmentally contribute to definition "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y."

has potential to directly develop into `http://purl.obolibrary.org/obo/RO_0002388`

Removed

has potential to directly develop into label "has potential to directly develop into"@en
has potential to directly develop into definition "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y"@en
has potential to directly develop into id "has_potential_to_directly_develop_into"
has potential to directly develop into database_cross_reference "RO:0002388"
has potential to directly develop into shorthand "has_potential_to_directly_develop_into"
has potential to directly develop into IAO_0000114 IAO_0000428
has potential to directly develop into has_obo_namespace "uberon"
has potential to directly develop into IAO_0000117 "Chris Mungall"
has potential to directly develop into definition "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y."
ObjectProperty: has potential to directly develop into
has potential to directly develop into SubPropertyOf: has potential to develop into

has quality `http://purl.obolibrary.org/obo/RO_0000086`

Removed

has quality SubPropertyOf: has characteristic

immediately posterior to `http://purl.obolibrary.org/obo/BSPO_0015012`

Removed

immediately posterior to label "immediately_posterior_to"

immediately preceded by `http://purl.obolibrary.org/obo/RO_0002087`

Removed

immediately preceded by external_definition "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]."
- source "SIO:000251"
immediately preceded by definition "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)."

immediately superficial to `http://purl.obolibrary.org/obo/BSPO_0015014`

Removed

immediately superficial to label "immediately_superficial_to"

immediately_anterior_to `http://purl.obolibrary.org/obo/BSPO_0015009`

Removed

immediately_anterior_to label "immediately_anterior_to"
immediately_anterior_to SubPropertyOf: adjacent to

in lateral side of `http://purl.obolibrary.org/obo/BSPO_0000126`

Removed

in lateral side of definition "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure."
- database_cross_reference 0000-0002-6601-2165

in_deep_part_of `http://purl.obolibrary.org/obo/BSPO_0001101`

Removed

in_deep_part_of label "in_deep_part_of"
in_deep_part_of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion."
- database_cross_reference 0000-0002-6601-2165

in_dorsal_side_of `http://purl.obolibrary.org/obo/BSPO_0015101`

Removed

in_dorsal_side_of label "in_dorsal_side_of"

in_left_side_of `http://purl.obolibrary.org/obo/BSPO_0000120`

Removed

in_left_side_of label "in_left_side_of"
in_left_side_of definition "X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion."
- database_cross_reference "BSPO:PATO_mtg_2009"
in_left_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

in_right_side_of `http://purl.obolibrary.org/obo/BSPO_0000121`

Removed

in_right_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
in_right_side_of label "in_right_side_of"
in_right_side_of definition "X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion."
- database_cross_reference "BSPO:PATO_mtg_2009"

in_superficial_part_of `http://purl.obolibrary.org/obo/BSPO_0001100`

Removed

in_superficial_part_of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion."
- database_cross_reference 0000-0002-6601-2165
in_superficial_part_of label "in_superficial_part_of"

in_ventral_side_of `http://purl.obolibrary.org/obo/BSPO_0015102`

Removed

in_ventral_side_of label "in_ventral_side_of"

innervated_by `http://purl.obolibrary.org/obo/RO_0002005`

Removed

innervated_by has_exact_synonym "nerve supply"
- database_cross_reference "FMA:85999"
innervated_by see also dbprop_nerve
innervated_by comment "http://code.google.com/p/obo-relations/issues/detail?id=6"
innervated_by see also FMA_85999

innervates `http://purl.obolibrary.org/obo/RO_0002134`

Removed

innervates comment "http://code.google.com/p/obo-relations/issues/detail?id=6"

intersects_midsagittal_plane_of `http://purl.obolibrary.org/obo/BSPO_0005001`

Removed

intersects_midsagittal_plane_of definition "X intersects_median_plane of iff X crosses the midine plane of Y."
intersects_midsagittal_plane_of label "intersects_midsagittal_plane_of"

member of `http://purl.obolibrary.org/obo/RO_0002350`

Removed

member of definition "is member of is a mereological relation between a item and a collection."
member of has_obo_namespace "uberon"
member of shorthand "member_of"
member of id "member_of"
member of label "member of"@en
member of database_cross_reference "RO:0002350"
ObjectProperty: member of
member of InverseOf has member
member of SubPropertyOf: part_of

only in taxon `http://purl.obolibrary.org/obo/RO_0002160`

Removed

only in taxon definition "S only_in_taxon T iff: S SubClassOf in_taxon only T."
- database_cross_reference 20973947

oral_to `http://purl.obolibrary.org/obo/BSPO_0015201`

Removed

oral_to id "oral_to"
oral_to has_obo_namespace "uberon"
oral_to label "oral_to"
oral_to shorthand "oral_to"
oral_to database_cross_reference "BSPO:0015201"
oral_to definition "nearer to the oral opening of the organism, on the oral-aboral axis."
- database_cross_reference "BSPO:cjm"
ObjectProperty: oral_to
Transitive: oral_to

overlaps `http://purl.obolibrary.org/obo/RO_0002131`

Removed

overlaps expand expression to "BFO_0000051 some (BFO_0000050 some ?Y)"

part of structure that is capable of `http://purl.obolibrary.org/obo/RO_0002329`

Removed

part of structure that is capable of IAO_0000118 false
part of structure that is capable of definition "this relation holds between c and p when c is part of some c', and c' is capable of p."
part of structure that is capable of database_cross_reference "RO:0002329"
part of structure that is capable of has_obo_namespace "uberon"
part of structure that is capable of label "part of structure that is capable of"@en
part of structure that is capable of IAO_0000117 "Chris Mungall"
part of structure that is capable of shorthand "part_of_structure_that_is_capable_of"
part of structure that is capable of id "part_of_structure_that_is_capable_of"
ObjectProperty: part of structure that is capable of
part of structure that is capable of SubPropertyOf: functionally related to
part_of o capable of SubPropertyOf: part of structure that is capable of

postaxial_to `http://purl.obolibrary.org/obo/BSPO_0001114`

Removed

postaxial_to shorthand "postaxial_to"
postaxial_to id "postaxial_to"
postaxial_to database_cross_reference "BSPO:0001114"
postaxial_to label "postaxial_to"
postaxial_to has_obo_namespace "uberon"
postaxial_to has_related_synonym "posterior_to (developmentally)"
- database_cross_reference "MA:th"
postaxial_to definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side."
- database_cross_reference postaxial
ObjectProperty: postaxial_to
Transitive: postaxial_to

postaxialmost_part_of `http://purl.obolibrary.org/obo/BSPO_0001115`

Removed

postaxialmost_part_of label "postaxialmost_part_of"

preaxial_to `http://purl.obolibrary.org/obo/BSPO_1000000`

Removed

preaxial_to has_related_synonym "lateral (radial) to"
preaxial_to has_obo_namespace "uberon"
preaxial_to label "preaxial_to"
preaxial_to has_related_synonym "medial (tibial) to"
preaxial_to shorthand "preaxial_to"
preaxial_to has_related_synonym "anterior_to (developmentally)"
- database_cross_reference "MA:th"
preaxial_to id "preaxial_to"
preaxial_to database_cross_reference "BSPO:1000000"
preaxial_to definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front."
- database_cross_reference preaxial
ObjectProperty: preaxial_to
Transitive: preaxial_to

preaxialmost part of `http://purl.obolibrary.org/obo/BSPO_0001113`

Removed

preaxialmost part of label "preaxialmost_part_of"

preceded_by `http://purl.obolibrary.org/obo/BFO_0000062`

Removed

preceded_by definition "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)."

proximalmost part of `http://purl.obolibrary.org/obo/BSPO_0001106`

Removed

proximalmost part of definition "X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y."
- database_cross_reference 0000-0002-6601-2165

simultaneous with `http://purl.obolibrary.org/obo/RO_0002082`

Removed

simultaneous with definition "Relation between occurrents, shares start and end boundaries."
- database_cross_reference 0000-0002-6601-2165
- database_cross_reference "Allen:is_equal_to"
simultaneous with has_exact_synonym "is_equal_to"
simultaneous with has_exact_synonym "coincides_with"

supplies `http://purl.obolibrary.org/obo/RO_0002178`

Removed

supplies comment "source: FMA"
supplies see also FMA_86003
supplies definition "relation between an artery and the structure is supplies with blood."
supplies has_exact_synonym "arterial supply of"
- database_cross_reference "FMA:86003"

surrounded by `http://purl.obolibrary.org/obo/RO_0002219`

Removed

surrounded by definition "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y."
- database_cross_reference 0000-0002-6601-2165

surrounds `http://purl.obolibrary.org/obo/RO_0002221`

Removed

surrounds definition "inverse of surrounded_by."
- database_cross_reference 0000-0002-6601-2165

Here's a diff of your mouse-view

# Ontology comparison

Left

Ontology IRI: http://purl.obolibrary.org/obo/uberon/subsets/mouse-view.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-05-04/subsets/mouse-view.owl
Loaded from: file:/work/src/ontology/../../master/src/ontology/subsets/mouse-view.owl

Right

Ontology IRI: http://purl.obolibrary.org/obo/uberon/subsets/mouse-view.owl
Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-05-04/subsets/mouse-view.owl
Loaded from: file:/work/src/ontology/subsets/mouse-view.owl

Ontology imports

Ontology annotations

2D boundary of `http://purl.obolibrary.org/obo/RO_0002000`

Removed

2D boundary of definition "a relation between a 2D immaterial entity (the boundary) and a material entity, in which the boundary delimits the material entity"@en
2D boundary of id "boundary_of"
2D boundary of database_cross_reference "RO:0002000"
2D boundary of shorthand "boundary_of"
2D boundary of has_obo_namespace "uberon"
2D boundary of label "2D boundary of"@en
ObjectProperty: 2D boundary of
2D boundary of InverseOf has 2D boundary

IAO_isReversiblePropertyChain `http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain`

Removed

AnnotationProperty: IAO_isReversiblePropertyChain

_:genid2147483648

Removed

_:genid2147483648 database_cross_reference "GO:0003224"

_:genid2147483649

Removed

_:genid2147483649 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483650

Removed

_:genid2147483650 database_cross_reference "MP:0009993"

_:genid2147483651

Removed

_:genid2147483651 database_cross_reference "MP:0009994"

_:genid2147483652

Removed

_:genid2147483652 database_cross_reference "HP:0000606"

_:genid2147483653

Removed

_:genid2147483653 database_cross_reference "MP:0009364"

_:genid2147483654

Removed

_:genid2147483654 database_cross_reference "MP:0009989"

_:genid2147483655

Removed

_:genid2147483655 database_cross_reference "FBC:DOS"
_:genid2147483655 database_cross_reference "FBC:VH"

_:genid2147483656

Removed

_:genid2147483656 database_cross_reference "GO:0072003"

_:genid2147483657

Removed

_:genid2147483657 database_cross_reference "GO:dph"
_:genid2147483657 database_cross_reference "ZFIN:cvs"

_:genid2147483658

Removed

_:genid2147483658 database_cross_reference "ISBN:0073040584"

_:genid2147483659

Removed

_:genid2147483659 database_cross_reference "MP:0009996"

_:genid2147483660

Removed

_:genid2147483660 database_cross_reference "HP:0003350"

_:genid2147483661

Removed

_:genid2147483661 database_cross_reference "MP:0010002"

_:genid2147483662

Removed

_:genid2147483662 database_cross_reference "GO:0021751"

_:genid2147483663

Removed

_:genid2147483663 database_cross_reference "FlyBase:FBrf0089570"

_:genid2147483664

Removed

_:genid2147483664 database_cross_reference "MP:0010003"

_:genid2147483665

Removed

_:genid2147483665 database_cross_reference "PHENOSCAPE:Wasila"

_:genid2147483666

Removed

_:genid2147483666 database_cross_reference "ISBN:0073040584"

_:genid2147483667

Removed

_:genid2147483667 database_cross_reference "GO:0003291"

_:genid2147483668

Removed

_:genid2147483668 database_cross_reference "HP:0000864"

_:genid2147483669

Removed

_:genid2147483669 database_cross_reference "GO:0003285"

_:genid2147483670

Removed

_:genid2147483670 database_cross_reference "FBC:DOS"

_:genid2147483671

Removed

_:genid2147483671 database_cross_reference "GO:0021729"
_:genid2147483671 database_cross_reference "GO_REF:0000021"

_:genid2147483672

Removed

_:genid2147483672 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483673

Removed

_:genid2147483673 database_cross_reference "GO:0061249"

_:genid2147483674

Removed

_:genid2147483674 database_cross_reference "FBC:VH"

_:genid2147483675

Removed

_:genid2147483675 database_cross_reference "ISBN:0073040584"

_:genid2147483676

Removed

_:genid2147483676 database_cross_reference "FBC:VH"

_:genid2147483677

Removed

_:genid2147483677 database_cross_reference "ISBN:0073040584"

_:genid2147483678

Removed

_:genid2147483678 database_cross_reference "MP:0009999"

_:genid2147483679

Removed

_:genid2147483679 database_cross_reference "FBC:DOS"

_:genid2147483680

Removed

_:genid2147483680 database_cross_reference "MP:0009990"

_:genid2147483681

Removed

_:genid2147483681 database_cross_reference "FBC:VH"
_:genid2147483681 database_cross_reference "FBC:DOS"

_:genid2147483682

Removed

_:genid2147483682 database_cross_reference "EFO:0000240"

_:genid2147483683

Removed

_:genid2147483683 database_cross_reference "MP:0009988"

_:genid2147483684

Removed

_:genid2147483684 database_cross_reference "UBERON:CL_meeting_20110725"

_:genid2147483685

Removed

_:genid2147483685 database_cross_reference "FBC:VH"

_:genid2147483686

Removed

_:genid2147483686 database_cross_reference "BIRNLEX:1734"

_:genid2147483687

Removed

_:genid2147483687 database_cross_reference "GO:0003225"

_:genid2147483688

Removed

_:genid2147483688 database_cross_reference "GO:0072166"

_:genid2147483689

Removed

_:genid2147483689 database_cross_reference "FlyBase:FBrf0064792"
_:genid2147483689 database_cross_reference "FlyBase:FBrf0007733"

_:genid2147483690

Removed

_:genid2147483690 database_cross_reference "GO:0003227"

_:genid2147483691

Removed

_:genid2147483691 database_cross_reference "GO:0072165"

_:genid2147483692

Removed

_:genid2147483692 database_cross_reference "HP:0003832"

_:genid2147483693

Removed

_:genid2147483693 database_cross_reference "GO:0061214"

_:genid2147483694

Removed

_:genid2147483694 database_cross_reference "PMCID:PMC2093943"

_:genid2147483695

Removed

_:genid2147483695 database_cross_reference "GO:0003226"

_:genid2147483696

Removed

_:genid2147483696 database_cross_reference "MP:0009946"

_:genid2147483697

Removed

_:genid2147483697 database_cross_reference "FBC:DOS"

_:genid2147483698

Removed

_:genid2147483698 database_cross_reference "FlyBase:FBrf0006943"

_:genid2147483699

Removed

_:genid2147483699 database_cross_reference "MP:0009997"

_:genid2147483700

Removed

_:genid2147483700 database_cross_reference "GO:0060682"

_:genid2147483701

Removed

_:genid2147483701 database_cross_reference "FlyBase:FBrf0007196"
_:genid2147483701 database_cross_reference "FlyBase:FBrf0002482"
_:genid2147483701 database_cross_reference "FlyBase:FBrf0034076"
_:genid2147483701 database_cross_reference "FlyBase:FBrf0007735"

_:genid2147483702

Removed

_:genid2147483702 database_cross_reference "FBC:DOS"

_:genid2147483703

Removed

_:genid2147483703 database_cross_reference "FBC:DOS"
_:genid2147483703 database_cross_reference "FBC:VH"

_:genid2147483704

Removed

_:genid2147483704 database_cross_reference "FBC:VH"

_:genid2147483705

Removed

_:genid2147483705 database_cross_reference "GO:0021728"

_:genid2147483706

Removed

_:genid2147483706 database_cross_reference "BIRNLEX:1755"

_:genid2147483707

Removed

_:genid2147483707 database_cross_reference "HP:0005289"

_:genid2147483708

Removed

_:genid2147483708 database_cross_reference "BIRNLEX:1732"

_:genid2147483709

Removed

_:genid2147483709 database_cross_reference "GO:0021729"

_:genid2147483710

Added

_:genid2147483710 database_cross_reference "MP:0009988"

_:genid2147483711

Added

_:genid2147483711 database_cross_reference "FBC:VH"

_:genid2147483712

Added

_:genid2147483712 database_cross_reference "GO:0060682"

_:genid2147483713

Added

_:genid2147483713 database_cross_reference "UBERON:CL_meeting_20110725"

_:genid2147483714

Added

_:genid2147483714 database_cross_reference "GO:0072003"

_:genid2147483715

Added

_:genid2147483715 database_cross_reference "GO_REF:0000021"
_:genid2147483715 database_cross_reference "GO:0021729"

_:genid2147483716

Added

_:genid2147483716 database_cross_reference "HP:0000606"

_:genid2147483717

Added

_:genid2147483717 database_cross_reference "HP:0005289"

_:genid2147483718

Added

_:genid2147483718 database_cross_reference "PMCID:PMC2093943"

_:genid2147483719

Added

_:genid2147483719 database_cross_reference "ISBN:0073040584"

_:genid2147483720

Added

_:genid2147483720 database_cross_reference "FlyBase:FBrf0006943"

_:genid2147483721

Added

_:genid2147483721 database_cross_reference "FBC:VH"

_:genid2147483722

Added

_:genid2147483722 database_cross_reference "HP:0000864"

_:genid2147483723

Added

_:genid2147483723 database_cross_reference "MP:0009993"

_:genid2147483724

Added

_:genid2147483724 database_cross_reference "FBC:VH"

_:genid2147483725

Added

_:genid2147483725 database_cross_reference "GO:0072166"

_:genid2147483726

Added

_:genid2147483726 database_cross_reference "FlyBase:FBrf0007733"
_:genid2147483726 database_cross_reference "FlyBase:FBrf0064792"

_:genid2147483727

Added

_:genid2147483727 database_cross_reference "FlyBase:FBrf0034076"
_:genid2147483727 database_cross_reference "FlyBase:FBrf0007196"
_:genid2147483727 database_cross_reference "FlyBase:FBrf0002482"
_:genid2147483727 database_cross_reference "FlyBase:FBrf0007735"

_:genid2147483728

Added

_:genid2147483728 database_cross_reference "GO:0021751"

_:genid2147483729

Added

_:genid2147483729 database_cross_reference "GO:0021729"

_:genid2147483730

Added

_:genid2147483730 database_cross_reference "GO:0061214"

_:genid2147483731

Added

_:genid2147483731 database_cross_reference "FlyBase:FBrf0089570"

_:genid2147483732

Added

_:genid2147483732 database_cross_reference "GO:0061249"

_:genid2147483733

Added

_:genid2147483733 database_cross_reference "MP:0010003"

_:genid2147483734

Added

_:genid2147483734 database_cross_reference "GO:0021728"

_:genid2147483735

Added

_:genid2147483735 database_cross_reference "GO:0003291"

_:genid2147483736

Added

_:genid2147483736 database_cross_reference "GO:0003227"

_:genid2147483737

Added

_:genid2147483737 database_cross_reference "MP:0009997"

_:genid2147483738

Added

_:genid2147483738 database_cross_reference "MP:0009989"

_:genid2147483739

Added

_:genid2147483739 database_cross_reference "FBC:DOS"

_:genid2147483740

Added

_:genid2147483740 database_cross_reference "MP:0010002"

_:genid2147483741

Added

_:genid2147483741 database_cross_reference "HP:0003832"

_:genid2147483742

Added

_:genid2147483742 database_cross_reference "BIRNLEX:1732"

_:genid2147483743

Added

_:genid2147483743 database_cross_reference "ISBN:0073040584"

_:genid2147483744

Added

_:genid2147483744 database_cross_reference "GO:0003225"

_:genid2147483745

Added

_:genid2147483745 database_cross_reference "GO:0072165"

_:genid2147483746

Added

_:genid2147483746 database_cross_reference "MP:0009994"

_:genid2147483747

Added

_:genid2147483747 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483748

Added

_:genid2147483748 database_cross_reference "EFO:0000240"

_:genid2147483749

Added

_:genid2147483749 database_cross_reference "MP:0009990"

_:genid2147483750

Added

_:genid2147483750 database_cross_reference "ISBN:0073040584"

_:genid2147483751

Added

_:genid2147483751 database_cross_reference "BIRNLEX:1755"

_:genid2147483752

Added

_:genid2147483752 database_cross_reference "GO:0003226"

_:genid2147483753

Added

_:genid2147483753 database_cross_reference "FBC:VH"
_:genid2147483753 database_cross_reference "FBC:DOS"

_:genid2147483754

Added

_:genid2147483754 database_cross_reference "PHENOSCAPE:alex"

_:genid2147483755

Added

_:genid2147483755 database_cross_reference "FBC:VH"
_:genid2147483755 database_cross_reference "FBC:DOS"

_:genid2147483756

Added

_:genid2147483756 database_cross_reference "FBC:DOS"
_:genid2147483756 database_cross_reference "FBC:VH"

_:genid2147483757

Added

_:genid2147483757 database_cross_reference "FBC:VH"

_:genid2147483758

Added

_:genid2147483758 database_cross_reference "ISBN:0073040584"

_:genid2147483759

Added

_:genid2147483759 database_cross_reference "FBC:DOS"

_:genid2147483760

Added

_:genid2147483760 database_cross_reference "FBC:DOS"

_:genid2147483761

Added

_:genid2147483761 database_cross_reference "PHENOSCAPE:Wasila"

_:genid2147483762

Added

_:genid2147483762 database_cross_reference "MP:0009999"

_:genid2147483763

Added

_:genid2147483763 database_cross_reference "MP:0009364"

_:genid2147483764

Added

_:genid2147483764 database_cross_reference "MP:0009946"

_:genid2147483765

Added

_:genid2147483765 database_cross_reference "GO:0003224"

_:genid2147483766

Added

_:genid2147483766 database_cross_reference "HP:0003350"

_:genid2147483767

Added

_:genid2147483767 database_cross_reference "MP:0009996"

_:genid2147483768

Added

_:genid2147483768 database_cross_reference "ZFIN:cvs"
_:genid2147483768 database_cross_reference "GO:dph"

_:genid2147483769

Added

_:genid2147483769 database_cross_reference "FBC:DOS"

_:genid2147483770

Added

_:genid2147483770 database_cross_reference "BIRNLEX:1734"

_:genid2147483771

Added

_:genid2147483771 database_cross_reference "GO:0003285"

aboral to `http://purl.obolibrary.org/obo/BSPO_0015202`

Removed

aboral to label "aboral_to"

adjacent to `http://purl.obolibrary.org/obo/RO_0002220`

Removed

adjacent to definition "x adjacent_to y iff: x and y share a boundary."

anterior_to `http://purl.obolibrary.org/obo/BSPO_0000096`

Removed

anterior_to definition "x anterior_to y iff x is further along the antero-posterior axis than y, towards the head. An antero-posterior axis is an axis that bisects an organism from head end to opposite end of body or tail: bearer."
- database_cross_reference 0000-0002-6601-2165
anterior_to contributor 0000-0002-6601-2165

attached to part of `http://purl.obolibrary.org/obo/RO_0002177`

Removed

attached to o part_of SubPropertyOf: attached to part of
- IAO_isReversiblePropertyChain "true"

Added

attached to o part_of SubPropertyOf: attached to part of

child nucleus of `http://purl.obolibrary.org/obo/RO_0002476`

Removed

child nucleus of id "child_nucleus_of"
child nucleus of shorthand "child_nucleus_of"
child nucleus of definition "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d"
child nucleus of database_cross_reference "RO:0002476"
child nucleus of label "child nucleus of"
child nucleus of has_obo_namespace "uberon"
ObjectProperty: child nucleus of
child nucleus of SubPropertyOf: developmentally preceded by

child nucleus of in hermaphrodite `http://purl.obolibrary.org/obo/RO_0002477`

Removed

child nucleus of in hermaphrodite definition "A child nucleus relationship in which the cells are part of a hermaphroditic organism"
child nucleus of in hermaphrodite label "child nucleus of in hermaphrodite"
child nucleus of in hermaphrodite id "child_nucleus_of_in_hermaphrodite"
child nucleus of in hermaphrodite database_cross_reference "RO:0002477"
child nucleus of in hermaphrodite shorthand "child_nucleus_of_in_hermaphrodite"
child nucleus of in hermaphrodite has_obo_namespace "uberon"
ObjectProperty: child nucleus of in hermaphrodite
child nucleus of in hermaphrodite SubPropertyOf: child nucleus of

child nucleus of in male `http://purl.obolibrary.org/obo/RO_0002478`

Removed

child nucleus of in male label "child nucleus of in male"
child nucleus of in male has_obo_namespace "uberon"
child nucleus of in male id "child_nucleus_of_in_male"
child nucleus of in male definition "A child nucleus relationship in which the cells are part of a male organism"
child nucleus of in male database_cross_reference "RO:0002478"
child nucleus of in male shorthand "child_nucleus_of_in_male"
ObjectProperty: child nucleus of in male
child nucleus of in male SubPropertyOf: child nucleus of

composed primarily of `http://purl.obolibrary.org/obo/RO_0002473`

Removed

composed primarily of definition "x composed_primarily_of y iff: more than half of the mass of x is made from parts of y."

confers advantage in `http://purl.obolibrary.org/obo/RO_0002322`

Removed

confers advantage in has_narrow_synonym "adapted_for"

derived from ancestral fusion of `http://purl.obolibrary.org/obo/RO_0002374`

Removed

derived from ancestral fusion of definition "x has_fused_element y iff: there exists some z : x has_part z, z homologous_to y, and y is a distinct element, the boundary between x and z is largely fiat."
derived from ancestral fusion of comment "A single bone in one species may correspond to the fusion of two or more bones found as distinct elements in another. For example, tibiofibula has_fused_element tibia. A has_fused_element B does not imply that A has_part some B, rather than A has_part some B', where B' is not a subtype of B (because B is a distinct element but B' is a regional part) but has some evolutionary relationship to B."

developmentally contributes to `http://purl.obolibrary.org/obo/RO_0002255`

Removed

developmentally contributes to label "developmentally contributes to"@en
developmentally contributes to IAO_0000114 IAO_0000125
developmentally contributes to in_subset RO_0002259
developmentally contributes to shorthand "developmentally_contributes_to"
developmentally contributes to definition "inverse of has developmental contribution from"
developmentally contributes to IAO_0000117 "Chris Mungall"
developmentally contributes to id "developmentally_contributes_to"
developmentally contributes to database_cross_reference "RO:0002255"
developmentally contributes to has_obo_namespace "uberon"
ObjectProperty: developmentally contributes to
developmentally contributes to SubPropertyOf: has potential to developmentally contribute to
develops into o part_of SubPropertyOf: developmentally contributes to

developmentally induced by `http://purl.obolibrary.org/obo/RO_0002256`

Removed

developmentally induced by SubPropertyOf: developmentally preceded by

developmentally preceded by `http://purl.obolibrary.org/obo/RO_0002258`

Removed

developmentally preceded by database_cross_reference "RO:0002258"
developmentally preceded by IAO_0000117 "Chris Mungall"
developmentally preceded by shorthand "developmentally_preceded_by"
developmentally preceded by label "developmentally preceded by"@en
developmentally preceded by IAO_0000114 IAO_0000125
developmentally preceded by comment "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from"
developmentally preceded by editor note false
developmentally preceded by curator notes "In general you should not use this relation to make assertions - use one of the more specific relations below this one"
developmentally preceded by has_obo_namespace "uberon"
developmentally preceded by id "developmentally_preceded_by"
developmentally preceded by definition "Candidate definition: x developmentally related to y if and only if there exists some developmental process (GO:0032502) p such that x and y both participates in p, and x is the output of p and y is the input of p"
ObjectProperty: developmentally preceded by

developmentally replaces `http://purl.obolibrary.org/obo/RO_0002285`

Removed

developmentally replaces SubPropertyOf: developmentally preceded by

develops from `http://purl.obolibrary.org/obo/RO_0002202`

Removed

develops from InverseOf develops into
develops from SubPropertyOf: developmentally preceded by

develops in `http://purl.obolibrary.org/obo/RO_0002226`

Removed

develops in comment "This relation take from EHDAA2 - precise semantics yet to be defined"
develops in SubPropertyOf: developmentally preceded by

develops into `http://purl.obolibrary.org/obo/RO_0002203`

Removed

develops into database_cross_reference "RO:0002203"
develops into in_subset RO_0002259
develops into label "develops into"@en
develops into has_obo_namespace "uberon"
develops into IAO_0000114 IAO_0000125
develops into IAO_0000117 "David Osumi-Sutherland"@en
develops into definition "inverse of develops from"
develops into IAO_0000117 "Chris Mungall"@en
develops into id "develops_into"
develops into shorthand "develops_into"
develops into IAO_0000117 "Terry Meehan"@en
ObjectProperty: develops into
develops into SubPropertyOf: has potential to develop into
develops into SubPropertyOf: has potential to directly develop into
Transitive: develops into

distalmost_part_of `http://purl.obolibrary.org/obo/BSPO_0001108`

Removed

distalmost_part_of definition "X distalmost_part_of Y <=> X is part_of Y and X is adjacent_to the distal boundary of Y."
- database_cross_reference 0000-0002-6601-2165

existence starts during or after `http://purl.obolibrary.org/obo/RO_0002496`

Removed

developmentally preceded by o existence starts during or after SubPropertyOf: existence starts during or after

expand expression to `http://purl.obolibrary.org/obo/IAO_0000424`

Removed

expand expression to label "expand expression to"

has characteristic `http://purl.obolibrary.org/obo/RO_0000053`

Removed

has characteristic example of usage "this apple is bearer of this red color"@en
has characteristic RO_0001900 RO_0001901
has characteristic definition "Inverse of characteristic_of"@en
has characteristic label "has characteristic"@en
has characteristic database_cross_reference "RO:0000053"
has characteristic has_obo_namespace "uberon"
has characteristic definition "a relation between an independent continuant (the bearer) and a specifically dependent continuant (the dependent), in which the dependent specifically depends on the bearer for its existence"@en
has characteristic example of usage "this vase is bearer of this fragility"@en
has characteristic id "bearer_of"
has characteristic IAO_0000118 "bearer_of"@en
has characteristic IAO_0000111 "bearer of"@en
has characteristic shorthand "bearer_of"
has characteristic editor note "A bearer can have many dependents, and its dependents can exist for different periods of time, but none of its dependents can exist when the bearer does not exist."@en
has characteristic IAO_0000118 "is bearer of"@en
ObjectProperty: has characteristic
InverseFunctional: has characteristic

has developmental contribution from `http://purl.obolibrary.org/obo/RO_0002254`

Removed

has developmental contribution from InverseOf developmentally contributes to
has developmental contribution from SubPropertyOf: developmentally preceded by

has muscle antagonist `http://purl.obolibrary.org/obo/RO_0002568`

Removed

has muscle antagonist definition "m1 has_muscle_antagonist m2 iff m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position."
- database_cross_reference Antagonist_(muscle)
has muscle antagonist see also dbpprop_antagonist

has muscle insertion `http://purl.obolibrary.org/obo/RO_0002373`

Removed

has muscle insertion see also dbpprop_insertion
has muscle insertion comment "The insertion is the point of attachment of a muscle that moves the most when the muscle shortens, or the most distal end of limb muscles"
has muscle insertion definition "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone."
- database_cross_reference Insertion_(anatomy)

has muscle origin `http://purl.obolibrary.org/obo/RO_0002372`

Removed

has muscle origin definition "m has_muscle_origin s iff m is attaches_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to."
- database_cross_reference Muscles
has muscle origin see also dbpprop_origin
has muscle origin comment "The origin is the end of a muscle that attaches to the more fixed part of the skeleton, which is the proximal end in limb muscles"

has potential to develop into `http://purl.obolibrary.org/obo/RO_0002387`

Removed

has potential to develop into definition "x has the potential to develop into y iff x develops into y or if x is capable of developing into y."

has potential to developmentally contribute to `http://purl.obolibrary.org/obo/RO_0002385`

Removed

has potential to developmentally contribute to definition "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y."

has potential to directly develop into `http://purl.obolibrary.org/obo/RO_0002388`

Removed

has potential to directly develop into label "has potential to directly develop into"@en
has potential to directly develop into definition "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y"@en
has potential to directly develop into id "has_potential_to_directly_develop_into"
has potential to directly develop into database_cross_reference "RO:0002388"
has potential to directly develop into shorthand "has_potential_to_directly_develop_into"
has potential to directly develop into IAO_0000114 IAO_0000428
has potential to directly develop into has_obo_namespace "uberon"
has potential to directly develop into IAO_0000117 "Chris Mungall"
has potential to directly develop into definition "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y."
ObjectProperty: has potential to directly develop into
has potential to directly develop into SubPropertyOf: has potential to develop into

has quality `http://purl.obolibrary.org/obo/RO_0000086`

Removed

has quality SubPropertyOf: has characteristic

immediately anterior to `http://purl.obolibrary.org/obo/BSPO_0015009`

Removed

immediately anterior to label "immediately_anterior_to"
immediately anterior to SubPropertyOf: adjacent to

immediately posterior to `http://purl.obolibrary.org/obo/BSPO_0015012`

Removed

immediately posterior to label "immediately_posterior_to"

immediately preceded by `http://purl.obolibrary.org/obo/RO_0002087`

Removed

immediately preceded by external_definition "A non-transitive temporal relation in which one process immediately precedes another process, such that there is no interval of time between the two processes[SIO:000251]."
- source "SIO:000251"
immediately preceded by definition "X immediately_preceded_by Y iff: end(X) simultaneous_with start(Y)."

immediately superficial to `http://purl.obolibrary.org/obo/BSPO_0015014`

Removed

immediately superficial to label "immediately_superficial_to"

in lateral side of `http://purl.obolibrary.org/obo/BSPO_0000126`

Removed

in lateral side of definition "X in_lateral_side_of Y <=> if X is in_left_side_of Y or X is in_right_side_of Y. X is often, but not always a paired structure."
- database_cross_reference 0000-0002-6601-2165

in_deep_part_of `http://purl.obolibrary.org/obo/BSPO_0001101`

Removed

in_deep_part_of label "in_deep_part_of"
in_deep_part_of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the deep portion."
- database_cross_reference 0000-0002-6601-2165

in_dorsal_side_of `http://purl.obolibrary.org/obo/BSPO_0015101`

Removed

in_dorsal_side_of label "in_dorsal_side_of"

in_left_side_of `http://purl.obolibrary.org/obo/BSPO_0000120`

Removed

in_left_side_of label "in_left_side_of"
in_left_side_of definition "X in_left_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the left portion."
- database_cross_reference "BSPO:PATO_mtg_2009"
in_left_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

in_right_side_of `http://purl.obolibrary.org/obo/BSPO_0000121`

Removed

in_right_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)
in_right_side_of label "in_right_side_of"
in_right_side_of definition "X in_right_side_of Y <=> if Y is subdivided into left and right portions, X is part_of the right portion."
- database_cross_reference "BSPO:PATO_mtg_2009"

in_superficial_part_of `http://purl.obolibrary.org/obo/BSPO_0001100`

Removed

in_superficial_part_of definition "X superficial_part_of Y <=> if Y is subdivided into two superficial and deep portions, X is part_of the superficial portion."
- database_cross_reference 0000-0002-6601-2165
in_superficial_part_of label "in_superficial_part_of"

in_ventral_side_of `http://purl.obolibrary.org/obo/BSPO_0015102`

Removed

in_ventral_side_of label "in_ventral_side_of"

innervated_by `http://purl.obolibrary.org/obo/RO_0002005`

Removed

innervated_by has_exact_synonym "nerve supply"
- database_cross_reference "FMA:85999"
innervated_by see also dbprop_nerve
innervated_by comment "http://code.google.com/p/obo-relations/issues/detail?id=6"
innervated_by see also FMA_85999

innervates `http://purl.obolibrary.org/obo/RO_0002134`

Removed

innervates comment "http://code.google.com/p/obo-relations/issues/detail?id=6"

intersects_midsagittal_plane_of `http://purl.obolibrary.org/obo/BSPO_0005001`

Removed

intersects_midsagittal_plane_of definition "X intersects_median_plane of iff X crosses the midine plane of Y."
intersects_midsagittal_plane_of label "intersects_midsagittal_plane_of"

member of `http://purl.obolibrary.org/obo/RO_0002350`

Removed

member of definition "is member of is a mereological relation between a item and a collection."
member of has_obo_namespace "uberon"
member of shorthand "member_of"
member of id "member_of"
member of label "member of"@en
member of database_cross_reference "RO:0002350"
ObjectProperty: member of
member of InverseOf has member
member of SubPropertyOf: part_of

only in taxon `http://purl.obolibrary.org/obo/RO_0002160`

Removed

only in taxon definition "S only_in_taxon T iff: S SubClassOf in_taxon only T."
- database_cross_reference 20973947

oral_to `http://purl.obolibrary.org/obo/BSPO_0015201`

Removed

oral_to id "oral_to"
oral_to has_obo_namespace "uberon"
oral_to label "oral_to"
oral_to shorthand "oral_to"
oral_to database_cross_reference "BSPO:0015201"
oral_to definition "nearer to the oral opening of the organism, on the oral-aboral axis."
- database_cross_reference "BSPO:cjm"
ObjectProperty: oral_to
Transitive: oral_to

overlaps `http://purl.obolibrary.org/obo/RO_0002131`

Removed

overlaps expand expression to "BFO_0000051 some (BFO_0000050 some ?Y)"

part of structure that is capable of `http://purl.obolibrary.org/obo/RO_0002329`

Removed

part of structure that is capable of IAO_0000118 false
part of structure that is capable of definition "this relation holds between c and p when c is part of some c', and c' is capable of p."
part of structure that is capable of database_cross_reference "RO:0002329"
part of structure that is capable of has_obo_namespace "uberon"
part of structure that is capable of label "part of structure that is capable of"@en
part of structure that is capable of IAO_0000117 "Chris Mungall"
part of structure that is capable of shorthand "part_of_structure_that_is_capable_of"
part of structure that is capable of id "part_of_structure_that_is_capable_of"
ObjectProperty: part of structure that is capable of
part of structure that is capable of SubPropertyOf: functionally related to
part_of o capable of SubPropertyOf: part of structure that is capable of

postaxial_to `http://purl.obolibrary.org/obo/BSPO_0001114`

Removed

postaxial_to shorthand "postaxial_to"
postaxial_to id "postaxial_to"
postaxial_to database_cross_reference "BSPO:0001114"
postaxial_to label "postaxial_to"
postaxial_to has_obo_namespace "uberon"
postaxial_to has_related_synonym "posterior_to (developmentally)"
- database_cross_reference "MA:th"
postaxial_to definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the postaxial side."
- database_cross_reference postaxial
ObjectProperty: postaxial_to
Transitive: postaxial_to

postaxialmost_part_of `http://purl.obolibrary.org/obo/BSPO_0001115`

Removed

postaxialmost_part_of label "postaxialmost_part_of"

preaxial_to `http://purl.obolibrary.org/obo/BSPO_1000000`

Removed

preaxial_to has_related_synonym "lateral (radial) to"
preaxial_to has_obo_namespace "uberon"
preaxial_to label "preaxial_to"
preaxial_to has_related_synonym "medial (tibial) to"
preaxial_to shorthand "preaxial_to"
preaxial_to has_related_synonym "anterior_to (developmentally)"
- database_cross_reference "MA:th"
preaxial_to id "preaxial_to"
preaxial_to database_cross_reference "BSPO:1000000"
preaxial_to definition "x preaxial_to y iff x is further along the preaxial-postaxial axis than y, towards the front."
- database_cross_reference preaxial
ObjectProperty: preaxial_to
Transitive: preaxial_to

preaxialmost part of `http://purl.obolibrary.org/obo/BSPO_0001113`

Removed

preaxialmost part of label "preaxialmost_part_of"

preceded_by `http://purl.obolibrary.org/obo/BFO_0000062`

Removed

preceded_by definition "X preceded_by Y iff: end(Y) before_or_simultaneous_with start(X)."

proximalmost_part_of `http://purl.obolibrary.org/obo/BSPO_0001106`

Removed

proximalmost_part_of definition "X proximalmost_part_of Y <=> X is part_of Y and X is adjacent_to the proximal boundary of Y."
- database_cross_reference 0000-0002-6601-2165

simultaneous with `http://purl.obolibrary.org/obo/RO_0002082`

Removed

simultaneous with definition "Relation between occurrents, shares start and end boundaries."
- database_cross_reference 0000-0002-6601-2165
- database_cross_reference "Allen:is_equal_to"
simultaneous with has_exact_synonym "is_equal_to"
simultaneous with has_exact_synonym "coincides_with"

supplies `http://purl.obolibrary.org/obo/RO_0002178`

Removed

supplies comment "source: FMA"
supplies see also FMA_86003
supplies definition "relation between an artery and the structure is supplies with blood."
supplies has_exact_synonym "arterial supply of"
- database_cross_reference "FMA:86003"

surrounded by `http://purl.obolibrary.org/obo/RO_0002219`

Removed

surrounded by definition "x surrounded_by y iff: x is adjacent to y and for every region r adjacent to x, r overlaps y."
- database_cross_reference 0000-0002-6601-2165

surrounds `http://purl.obolibrary.org/obo/RO_0002221`

Removed

surrounds definition "inverse of surrounded_by."
- database_cross_reference 0000-0002-6601-2165

matentzn

Excellent work! I would like @shawntanzk when he is back to make sure the diff looks ok, then he can merge this. Super, super cool.

shawntanzk · 2022-05-10T07:26:56Z

not 100% sure what im suppose to look out for, but it doesn't seem to affect the class hierarchy of uberon (seeing the diff on simple file, the only changes seem to be what you changed, rather than axioms in uberon changing as a result) - which I assume is a good thing, and hence don't think there's an issue which this at all?

Anita Caron added 2 commits April 1, 2022 16:30

delete external axioms

11b58d7

Merge branch 'master' into anitacaron/issue2263

944f80f

anitacaron requested a review from matentzn April 1, 2022 15:37

anitacaron marked this pull request as draft April 1, 2022 15:42

update uberon.Makefile

dcc6015

anitacaron marked this pull request as ready for review April 1, 2022 15:59

anitacaron self-assigned this Apr 1, 2022

anitacaron added the tech label Apr 4, 2022

anitacaron marked this pull request as draft April 7, 2022 16:03

Anita Caron added 3 commits April 13, 2022 19:11

first chunk axioms removed

c6db563

revert change in uberon.Makefile

98c38d0

Merge branch 'master' into anitacaron/issue2263

9a88c08

matentzn reviewed Apr 14, 2022

View reviewed changes

Anita Caron added 3 commits April 19, 2022 17:26

Merge branch 'master' into anitacaron/issue2263

4200b54

remove not base axioms

b42d2c0

remove axioms not base

94dd893

matentzn reviewed Apr 22, 2022

View reviewed changes

Merge branch 'master' into anitacaron/issue2263

053f2da

anitacaron marked this pull request as ready for review April 25, 2022 17:27

delete external Typedef not being used

4cea47c

cmungall approved these changes Apr 27, 2022

View reviewed changes

dosumis self-requested a review April 28, 2022 09:21

anitacaron marked this pull request as draft May 4, 2022 08:48

Anita Caron added 2 commits May 4, 2022 11:36

update name (label) conform to source

e10f6db

Merge branch 'master' into anitacaron/issue2263

92f3022

delete all annotations in external properties

f550d20

anitacaron marked this pull request as ready for review May 4, 2022 19:33

anitacaron mentioned this pull request May 4, 2022

Logical axioms from external relationships found in edit file #2453

Open

anitacaron requested a review from matentzn May 4, 2022 19:36

matentzn approved these changes May 5, 2022

View reviewed changes

Merge branch 'master' into anitacaron/issue2263

1d12ba7

matentzn merged commit 8c6a065 into master May 11, 2022

matentzn deleted the anitacaron/issue2263 branch May 11, 2022 13:54

Delete all external axioms on base file #2377

Delete all external axioms on base file #2377

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anitacaron commented Apr 1, 2022 • edited Loading

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dosumis commented Apr 28, 2022

anitacaron commented May 4, 2022

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Ontology comparison

Left

Right

Ontology imports

Ontology annotations

IAO_isReversiblePropertyChain http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain

Removed

aboral to http://purl.obolibrary.org/obo/BSPO_0015202

Removed

adjacent_to http://purl.obolibrary.org/obo/RO_0002220

Removed

anterior_to http://purl.obolibrary.org/obo/BSPO_0000096

Removed

attached to part of http://purl.obolibrary.org/obo/RO_0002177

Removed

Added

attaches_to http://purl.obolibrary.org/obo/RO_0002371

Added

bearer of http://purl.obolibrary.org/obo/RO_0000053

Removed

boundary of http://purl.obolibrary.org/obo/RO_0002000

Removed

branching_part_of http://purl.obolibrary.org/obo/RO_0002380

Added

child nucleus of http://purl.obolibrary.org/obo/RO_0002476

Removed

child nucleus of in hermaphrodite http://purl.obolibrary.org/obo/RO_0002477

Removed

child nucleus of in male http://purl.obolibrary.org/obo/RO_0002478

Removed

composed primarily of http://purl.obolibrary.org/obo/RO_0002473

Removed

confers_advantage_in http://purl.obolibrary.org/obo/RO_0002322

Removed

Added

connected to http://purl.obolibrary.org/obo/RO_0002170

Removed

connects http://purl.obolibrary.org/obo/RO_0002176

Removed

continuous with http://purl.obolibrary.org/obo/RO_0002150

Added

developmentally contributes to http://purl.obolibrary.org/obo/RO_0002255

Removed

developmentally preceded by http://purl.obolibrary.org/obo/RO_0002258

Removed

developmentally replaces http://purl.obolibrary.org/obo/RO_0002285

Removed

Added

developmentally_induced_by http://purl.obolibrary.org/obo/RO_0002256

Removed

Added

developmentally_succeeded_by http://purl.obolibrary.org/obo/uberon/core#developmentally_succeeded_by

Removed

develops from http://purl.obolibrary.org/obo/RO_0002202

Removed

develops from part of http://purl.obolibrary.org/obo/RO_0002225

Removed

Added

develops_in http://purl.obolibrary.org/obo/RO_0002226

Removed

Added

develops_into http://purl.obolibrary.org/obo/RO_0002203

Removed

directly develops from http://purl.obolibrary.org/obo/RO_0002207

Removed

Added

distal_to http://purl.obolibrary.org/obo/BSPO_0000097

anitacaron commented Apr 1, 2022 •

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IAO_isReversiblePropertyChain `http://purl.obolibrary.org/obo/IAO_isReversiblePropertyChain`

aboral to `http://purl.obolibrary.org/obo/BSPO_0015202`

adjacent_to `http://purl.obolibrary.org/obo/RO_0002220`

anterior_to `http://purl.obolibrary.org/obo/BSPO_0000096`

attached to part of `http://purl.obolibrary.org/obo/RO_0002177`

attaches_to `http://purl.obolibrary.org/obo/RO_0002371`

bearer of `http://purl.obolibrary.org/obo/RO_0000053`

boundary of `http://purl.obolibrary.org/obo/RO_0002000`

branching_part_of `http://purl.obolibrary.org/obo/RO_0002380`

child nucleus of `http://purl.obolibrary.org/obo/RO_0002476`

child nucleus of in hermaphrodite `http://purl.obolibrary.org/obo/RO_0002477`

child nucleus of in male `http://purl.obolibrary.org/obo/RO_0002478`

composed primarily of `http://purl.obolibrary.org/obo/RO_0002473`

confers_advantage_in `http://purl.obolibrary.org/obo/RO_0002322`

connected to `http://purl.obolibrary.org/obo/RO_0002170`

connects `http://purl.obolibrary.org/obo/RO_0002176`

continuous with `http://purl.obolibrary.org/obo/RO_0002150`

developmentally contributes to `http://purl.obolibrary.org/obo/RO_0002255`

developmentally preceded by `http://purl.obolibrary.org/obo/RO_0002258`

developmentally replaces `http://purl.obolibrary.org/obo/RO_0002285`

developmentally_induced_by `http://purl.obolibrary.org/obo/RO_0002256`

developmentally_succeeded_by `http://purl.obolibrary.org/obo/uberon/core#developmentally_succeeded_by`

develops from `http://purl.obolibrary.org/obo/RO_0002202`

develops from part of `http://purl.obolibrary.org/obo/RO_0002225`

develops_in `http://purl.obolibrary.org/obo/RO_0002226`

develops_into `http://purl.obolibrary.org/obo/RO_0002203`

directly develops from `http://purl.obolibrary.org/obo/RO_0002207`

distal_to `http://purl.obolibrary.org/obo/BSPO_0000097`

distalmost part of `http://purl.obolibrary.org/obo/BSPO_0001108`

dorsal_to `http://purl.obolibrary.org/obo/BSPO_0000098`

ends `http://purl.obolibrary.org/obo/RO_0002229`

existence ends during or before `http://purl.obolibrary.org/obo/RO_0002497`

existence ends with `http://purl.obolibrary.org/obo/RO_0002493`

existence starts during `http://purl.obolibrary.org/obo/RO_0002488`

existence starts during or after `http://purl.obolibrary.org/obo/RO_0002496`

existence starts with `http://purl.obolibrary.org/obo/RO_0002489`

expand expression to `http://purl.obolibrary.org/obo/IAO_0000424`

has 2D boundary `http://purl.obolibrary.org/obo/RO_0002002`

has developmental contribution from `http://purl.obolibrary.org/obo/RO_0002254`

has muscle insertion `http://purl.obolibrary.org/obo/RO_0002373`

has potential to develop into `http://purl.obolibrary.org/obo/RO_0002387`

has potential to developmentally contribute to `http://purl.obolibrary.org/obo/RO_0002385`

has potential to directly develop into `http://purl.obolibrary.org/obo/RO_0002388`

has quality `http://purl.obolibrary.org/obo/RO_0000086`

has skeleton `http://purl.obolibrary.org/obo/RO_0002551`

has_fused_element `http://purl.obolibrary.org/obo/RO_0002374`

has_muscle_antagonist `http://purl.obolibrary.org/obo/RO_0002568`

has_muscle_origin `http://purl.obolibrary.org/obo/RO_0002372`

homologous_to `http://purl.obolibrary.org/obo/RO_0002158`

immediate transformation of `http://purl.obolibrary.org/obo/RO_0002495`

immediately posterior to `http://purl.obolibrary.org/obo/BSPO_0015012`

immediately preceded by `http://purl.obolibrary.org/obo/RO_0002087`

immediately superficial to `http://purl.obolibrary.org/obo/BSPO_0015014`

immediately_anterior_to `http://purl.obolibrary.org/obo/BSPO_0015009`

immediately_deep_to `http://purl.obolibrary.org/obo/BSPO_0001107`

in lateral side of `http://purl.obolibrary.org/obo/BSPO_0000126`

in_deep_part_of `http://purl.obolibrary.org/obo/BSPO_0001101`

in_dorsal_side_of `http://purl.obolibrary.org/obo/BSPO_0015101`