Update BSPO import

[anitacaron]

In this updated import we have:

• removed bspo axiomes that was in uberon-edit.obo
• moved in central side of from Uberon to BSPO
• imported BSPO:0020001 that is the new in central side of BSPO term

These modifications are part of the Uberon cleansing to have a real uberon-base artifact. Related to #2453

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-06-28/uberon-simple.owl
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-06-28/uberon-simple.owl
• Loaded from: file:/work/src/ontology/uberon-simple.owl

Ontology imports

Ontology annotations

BSPO_0020001 http://purl.obolibrary.org/obo/BSPO_0020001

Added

• BSPO_0020001 see also Modeling-paired-structures-Design-Pattern

• BSPO_0020001 shorthand "in_central_side_of"

• BSPO_0020001 see also BSPO_0000059

• BSPO_0020001 definition "X in_central_side Y <=> if Y is subdivided into left and right portions around some median divisor, all parts of X are closer to the median divisor than the outermost lateral sides."

  • database_cross_reference "BSPO:cjm"

• BSPO_0020001 contributor 0000-0002-6523-4866

• BSPO_0020001 database_cross_reference "BSPO:0020001"

• BSPO_0020001 editor note "This was migrated from http://purl.obolibrary.org/obo/uberon/core#in_central_side_of in Uberon."

• BSPO_0020001 label "in central side of"

• BSPO_0020001 id "in_central_side_of"

• BSPO_0020001 has_obo_namespace "uberon"

• ObjectProperty: BSPO_0020001

• BSPO_0020001 SubPropertyOf: part_of

aboral to http://purl.obolibrary.org/obo/BSPO_0015202

Added

• aboral to has_obo_namespace "spatial"

adjacent_to http://purl.obolibrary.org/obo/RO_0002220

Added

• adjacent_to has_obo_namespace "spatial"

anterior_to http://purl.obolibrary.org/obo/BSPO_0000096

Added

• anterior_to see also FBql_00005863

• anterior_to has_obo_namespace "spatial"

• anterior_to has_exact_synonym "rostral_to"

• anterior_to see also FBcv_0000039

central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018551

Removed

• central incisor tooth SubClassOf in_central_side_of some incisor region of dentition

Added

• central incisor tooth SubClassOf BSPO_0020001 some incisor region of dentition

deep to http://purl.obolibrary.org/obo/BSPO_0000107

Added

• deep to has_obo_namespace "spatial"

distal_to http://purl.obolibrary.org/obo/BSPO_0000097

Added

• distal_to see also FBcv_0000040

• distal_to has_obo_namespace "spatial"

• distal_to see also FBql_00005867

distalmost part of http://purl.obolibrary.org/obo/BSPO_0001108

Added

• distalmost part of has_obo_namespace "spatial"

dorsal_to http://purl.obolibrary.org/obo/BSPO_0000098

Added

• dorsal_to see also FBcv_0000041

• dorsal_to has_obo_namespace "spatial"

• dorsal_to see also FBql_00005865

has_part http://purl.obolibrary.org/obo/BFO_0000051

Added

• has_part has_obo_namespace "spatial"

immediately anterior to http://purl.obolibrary.org/obo/BSPO_0015009

Added

• immediately anterior to has_obo_namespace "spatial"

immediately posterior to http://purl.obolibrary.org/obo/BSPO_0015012

Added

• immediately posterior to has_obo_namespace "spatial"

• immediately posterior to see also 2453

immediately superficial to http://purl.obolibrary.org/obo/BSPO_0015014

Added

• immediately superficial to has_obo_namespace "spatial"

• immediately superficial to see also 2453

immediately_deep_to http://purl.obolibrary.org/obo/BSPO_0001107

Added

• immediately_deep_to has_obo_namespace "spatial"

in deep part of http://purl.obolibrary.org/obo/BSPO_0001101

Added

• in deep part of has_obo_namespace "spatial"

in distal side of http://purl.obolibrary.org/obo/BSPO_0000125

Added

• in distal side of has_obo_namespace "spatial"

in dorsal side of http://purl.obolibrary.org/obo/BSPO_0015101

Added

• in dorsal side of has_obo_namespace "spatial"

in lateral side of http://purl.obolibrary.org/obo/BSPO_0000126

Removed

• in lateral side of DisjointWith in_central_side_of

Added

• in lateral side of has_obo_namespace "spatial"

• in lateral side of see also 2453

• in lateral side of DisjointWith BSPO_0020001

in left side of http://purl.obolibrary.org/obo/BSPO_0000120

Added

• in left side of has_obo_namespace "spatial"

• in left side of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

in posterior side of http://purl.obolibrary.org/obo/BSPO_0000122

Added

• in posterior side of has_obo_namespace "spatial"

in right side of http://purl.obolibrary.org/obo/BSPO_0000121

Added

• in right side of has_obo_namespace "spatial"

• in right side of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

in superficial part of http://purl.obolibrary.org/obo/BSPO_0001100

Added

• in superficial part of has_obo_namespace "spatial"

in ventral side of http://purl.obolibrary.org/obo/BSPO_0015102

Added

• in ventral side of has_obo_namespace "spatial"

in_anterior_side_of http://purl.obolibrary.org/obo/BSPO_0000123

Added

• in_anterior_side_of has_obo_namespace "spatial"

in_central_side_of http://purl.obolibrary.org/obo/uberon/core#in_central_side_of

Removed

• in_central_side_of definition "X in_central_side Y <=> if Y is subdivided into left and right portions around some median divisor, all parts of X are closer to the median divisor than the outermost lateral sides."

  • database_cross_reference "BSPO:cjm"

• in_central_side_of see also BSPO_0000059

• in_central_side_of has_obo_namespace "uberon"

• in_central_side_of label "in_central_side_of"

• in_central_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• in_central_side_of id "in_central_side_of"

• ObjectProperty: in_central_side_of

• in_central_side_of SubPropertyOf: part_of

in_proximal_side_of http://purl.obolibrary.org/obo/BSPO_0000124

Added

• in_proximal_side_of has_obo_namespace "spatial"

intersects midsagittal plane of http://purl.obolibrary.org/obo/BSPO_0005001

Added

• intersects midsagittal plane of has_obo_namespace "spatial"

overlaps http://purl.obolibrary.org/obo/RO_0002131

Added

• overlaps comment ""(forall (x y) (iff (overlaps x y) (exists (z) (and (part of z x) (part of z y)))))" CLIF []"

• overlaps has_obo_namespace "spatial"

• overlaps definition "x overlaps y iff they have some part in common."

  • database_cross_reference "BSPO:cjm"

part_of http://purl.obolibrary.org/obo/BFO_0000050

Added

• part_of has_obo_namespace "spatial"

postaxialmost part of http://purl.obolibrary.org/obo/BSPO_0001115

Added

• postaxialmost part of has_obo_namespace "spatial"

posterior to http://purl.obolibrary.org/obo/BSPO_0000099

Added

• posterior to has_obo_namespace "spatial"

• posterior to see also FBql_00005864

• posterior to see also FBcv_0000045

• posterior to has_narrow_synonym "caudal to"

  • has_synonym_type vertebrate

preaxialmost part of http://purl.obolibrary.org/obo/BSPO_0001113

Added

• preaxialmost part of has_obo_namespace "spatial"

proximal_to http://purl.obolibrary.org/obo/BSPO_0000100

Added

• proximal_to see also FBcv_0000047

• proximal_to see also FBql_00005868

• proximal_to comment "The elbow is proximal to the hand, but distal to the shoulder."

• proximal_to has_obo_namespace "spatial"

proximalmost part of http://purl.obolibrary.org/obo/BSPO_0001106

Added

• proximalmost part of has_obo_namespace "spatial"

see also http://www.w3.org/2000/01/rdf-schema#seeAlso

Added

• see also has_obo_namespace "spatial"

superficial_to http://purl.obolibrary.org/obo/BSPO_0000108

Added

• superficial_to has_obo_namespace "spatial"

ventral_to http://purl.obolibrary.org/obo/BSPO_0000102

Added

• ventral_to see also FBql_00005866

• ventral_to has_obo_namespace "spatial"

• ventral_to see also FBcv_0000049

vertebrate http://purl.obolibrary.org/obo/bspo#vertebrate

Added

• AnnotationProperty: vertebrate

• vertebrate SubPropertyOf: synonym_type_property

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/uberon-edit.obo

Ontology imports

Added

• bspo_import.owl

Ontology annotations

central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018551

Removed

• central incisor tooth EquivalentTo incisor tooth and (in_central_side_of some incisor region of dentition)

Added

• central incisor tooth EquivalentTo incisor tooth and (in central side of some incisor region of dentition)

immediately posterior to http://purl.obolibrary.org/obo/BSPO_0015012

Removed

• immediately posterior to SubPropertyOf: adjacent to

immediately superficial to http://purl.obolibrary.org/obo/BSPO_0015014

Removed

• immediately superficial to SubPropertyOf: adjacent to

in central side of http://purl.obolibrary.org/obo/BSPO_0020001

Added

• in central side of label "in central side of"^^string

• in central side of shorthand "in_central_side_of"^^string

• in central side of database_cross_reference "BSPO:0020001"^^string

• in central side of id "in_central_side_of"^^string

• in central side of has_obo_namespace "uberon"^^string

• ObjectProperty: in central side of

in lateral side of http://purl.obolibrary.org/obo/BSPO_0000126

Removed

• in lateral side of DisjointWith in_central_side_of

in_central_side_of http://purl.obolibrary.org/obo/uberon/core#in_central_side_of

Removed

• in_central_side_of definition "X in_central_side Y <=> if Y is subdivided into left and right portions around some median divisor, all parts of X are closer to the median divisor than the outermost lateral sides."^^string

  • database_cross_reference "BSPO:cjm"^^string

• in_central_side_of see also BSPO_0000059

• in_central_side_of has_obo_namespace "uberon"^^string

• in_central_side_of label "in_central_side_of"^^string

• in_central_side_of see also "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• in_central_side_of id "in_central_side_of"^^string

• ObjectProperty: in_central_side_of

• in_central_side_of SubPropertyOf: part_of

lower central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018601

Removed

• lower central incisor tooth EquivalentTo incisor tooth and (part_of some lower jaw region) and (in_central_side_of some incisor region of dentition)

Added

• lower central incisor tooth EquivalentTo incisor tooth and (part_of some lower jaw region) and (in central side of some incisor region of dentition)

lower central primary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018595

Removed

• lower central primary incisor tooth EquivalentTo lower primary incisor tooth and (in_central_side_of some incisor region of dentition)

Added

• lower central primary incisor tooth EquivalentTo lower primary incisor tooth and (in central side of some incisor region of dentition)

lower central secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018568

Removed

• lower central secondary incisor tooth EquivalentTo lower jaw incisor and (part_of some secondary dentition) and (in_central_side_of some incisor region of dentition)

Added

• lower central secondary incisor tooth EquivalentTo lower jaw incisor and (part_of some secondary dentition) and (in central side of some incisor region of dentition)

primary central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018553

Removed

• primary central incisor tooth EquivalentTo primary incisor tooth and (in_central_side_of some incisor region of dentition)

Added

• primary central incisor tooth EquivalentTo primary incisor tooth and (in central side of some incisor region of dentition)

upper central incisor tooth http://purl.obolibrary.org/obo/UBERON_0018603

Removed

• upper central incisor tooth EquivalentTo incisor tooth and (part_of some upper jaw region) and (in_central_side_of some incisor region of dentition)

Added

• upper central incisor tooth EquivalentTo incisor tooth and (part_of some upper jaw region) and (in central side of some incisor region of dentition)

upper central primary incisor tooth http://purl.obolibrary.org/obo/UBERON_0018593

Removed

• upper central primary incisor tooth EquivalentTo upper primary incisor tooth and (in_central_side_of some incisor region of dentition)

Added

• upper central primary incisor tooth EquivalentTo upper primary incisor tooth and (in central side of some incisor region of dentition)

upper central secondary incisor tooth http://purl.obolibrary.org/obo/UBERON_0016454

Removed

• upper central secondary incisor tooth EquivalentTo incisor tooth and (part_of some upper jaw region) and (part_of some secondary dentition) and (in_central_side_of some incisor region of dentition)

Added

• upper central secondary incisor tooth EquivalentTo incisor tooth and (part_of some upper jaw region) and (part_of some secondary dentition) and (in central side of some incisor region of dentition)

[matentzn]

Do I see this correctly that the PR has no impact on the classification (subclass axioms)?