Make sure the SSSOM-derived cross-reference use correct OBO prefixes. #3465
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Most of the prefixes used by the taxon-specific life stage ontologies (SSLSO) are not intrinsically known by ROBOT (prefixes such as BtauDv, GgalDv, PpanDv, etc.). As a result, when the mappings from SSLSO are transformed into cross-references for injection into the ontology (when we create the `mappings.owl` component), the SSLSO term IDs are shortened using the only suitable prefix that ROBOT knows about, the `obo:` prefix. This means that a mapping to, say, <http://purl.obolibrary.org/obo/BtauDv_0000078> gets turned into a cross-reference to `obo:BtauDv_0000078` -- which is, strictly speaking, correct, but _not_ the format most people would expect for OBO-style cross-references (which would be BtauDv:0000078). The fix is simply to make sure the prefixes are correctly declared.
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Most of the prefixes used by the taxon-specific life stage ontologies (SSLSO) are not intrinsically known by ROBOT (prefixes such as BtauDv, GgalDv, PpanDv, etc.).
As a result, when the mappings from SSLSO are transformed into cross-references for injection into the ontology (when we create the
mappings.owlcomponent), the SSLSO term IDs are shortened using the only suitable prefix that ROBOT knows about, theobo:prefix.This means that a mapping to, say, http://purl.obolibrary.org/obo/BtauDv_0000078 gets turned into a cross-reference to
obo:BtauDv_0000078-- which is, strictly speaking, correct, but not the format most people would expect for OBO-style cross-references (which would beBtauDv:0000078).The fix is simply to make sure the prefixes are correctly declared.