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Add abnormal thickness of anat. entity template (#843)
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* Add abnormal thickness of anat. entity template
This commit intends to add a `abnormalThicknessOfAnatomicalEntity.yaml` DOS-DP pattern draft for community review.
* Improve pattern template based on feedback

If applied, this commit will fix #842.
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rays22 authored Jul 11, 2022
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---
pattern_name: abnormalThicknessOfAnatomicalEntity

pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalThicknessOfAnatomicalEntity.yaml

description: 'Use this phenotype pattern when an anatomical entity displays
abnormal thickness.'

# examples:
# - http://purl.obolibrary.org/obo/HP_0011486 # Abnormality of corneal thickness
# - http://purl.obolibrary.org/obo/MP_0011961 # abnormal cornea thickness
# - http://purl.obolibrary.org/obo/MP_0020135 # abnormal heart ventricle wall thickness

contributors:
- https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik
- https://orcid.org/0000-0001-5208-3432 # Nicole Vasilevsky
- https://orcid.org/0000-0002-3528-5267 # Sofia Robb
- https://orcid.org/0000-0002-6490-7723 # Anna V. Anagnostopoulos
- https://orcid.org/0000-0002-7356-1779 # Nicolas Matentzoglu
- https://orcid.org/0000-0003-4606-0597 # Susan Bello

classes:
thickness: PATO:0000915
abnormal: PATO:0000460
anatomical_entity: UBERON:0001062

relations:
characteristic_of: RO:0000052
has_modifier: RO:0002573
has_part: BFO:0000051

annotationProperties:
exact_synonym: oio:hasExactSynonym

vars:
anatomical_entity: "'anatomical_entity'"

name:
text: "abnormal %s thickness"
vars:
- anatomical_entity

annotations:
- annotationProperty: exact_synonym
text: "%s thickness abnormality"
vars:
- anatomical_entity

def:
text: "Abnormal thickness of %s in a dimension that is perpendicular to its
length or width."
vars:
- anatomical_entity

equivalentTo:
text: "'has_part' some (
'thickness' and
('characteristic_of' some %s) and
('has_modifier' some 'abnormal')
)"
vars:
- anatomical_entity
...

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