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Add abnormal thickness of anat. entity template (#843)
* Add abnormal thickness of anat. entity template This commit intends to add a `abnormalThicknessOfAnatomicalEntity.yaml` DOS-DP pattern draft for community review. * Improve pattern template based on feedback If applied, this commit will fix #842.
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src/patterns/dosdp-dev/abnormalThicknessOfAnatomicalEntity.yaml
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pattern_name: abnormalThicknessOfAnatomicalEntity | ||
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pattern_iri: http://purl.obolibrary.org/obo/upheno/patterns-dev/abnormalThicknessOfAnatomicalEntity.yaml | ||
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description: 'Use this phenotype pattern when an anatomical entity displays | ||
abnormal thickness.' | ||
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# examples: | ||
# - http://purl.obolibrary.org/obo/HP_0011486 # Abnormality of corneal thickness | ||
# - http://purl.obolibrary.org/obo/MP_0011961 # abnormal cornea thickness | ||
# - http://purl.obolibrary.org/obo/MP_0020135 # abnormal heart ventricle wall thickness | ||
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contributors: | ||
- https://orcid.org/0000-0001-8314-2140 # Ray Stefancsik | ||
- https://orcid.org/0000-0001-5208-3432 # Nicole Vasilevsky | ||
- https://orcid.org/0000-0002-3528-5267 # Sofia Robb | ||
- https://orcid.org/0000-0002-6490-7723 # Anna V. Anagnostopoulos | ||
- https://orcid.org/0000-0002-7356-1779 # Nicolas Matentzoglu | ||
- https://orcid.org/0000-0003-4606-0597 # Susan Bello | ||
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classes: | ||
thickness: PATO:0000915 | ||
abnormal: PATO:0000460 | ||
anatomical_entity: UBERON:0001062 | ||
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relations: | ||
characteristic_of: RO:0000052 | ||
has_modifier: RO:0002573 | ||
has_part: BFO:0000051 | ||
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annotationProperties: | ||
exact_synonym: oio:hasExactSynonym | ||
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vars: | ||
anatomical_entity: "'anatomical_entity'" | ||
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name: | ||
text: "abnormal %s thickness" | ||
vars: | ||
- anatomical_entity | ||
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annotations: | ||
- annotationProperty: exact_synonym | ||
text: "%s thickness abnormality" | ||
vars: | ||
- anatomical_entity | ||
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def: | ||
text: "Abnormal thickness of %s in a dimension that is perpendicular to its | ||
length or width." | ||
vars: | ||
- anatomical_entity | ||
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equivalentTo: | ||
text: "'has_part' some ( | ||
'thickness' and | ||
('characteristic_of' some %s) and | ||
('has_modifier' some 'abnormal') | ||
)" | ||
vars: | ||
- anatomical_entity | ||
... |