Addresses #787 Infer has_soma_location from part_of for neuron (#817)

* Addresses #787 Infer has_soma_location from part_of for neuron

Addresses #787 Infer has_soma_location from part_of for neuron

* Remove is_reflexive

* Add self reflexivity

---------

Co-authored-by: David Osumi-Sutherland <dosumis@gmail.com>

src/ontology/ro-edit.owl

@@ -611,6 +611,8 @@ Declaration(ObjectProperty(obo:RO_0019501))
 Declaration(ObjectProperty(obo:RO_0020101))
 Declaration(ObjectProperty(obo:RO_0020102))
 Declaration(ObjectProperty(obo:RO_0020103))
+Declaration(ObjectProperty(obo:RO_0020104))
+Declaration(ObjectProperty(obo:RO_0020105))
 Declaration(ObjectProperty(obo:RO_0020202))
 Declaration(ObjectProperty(obo:RO_0020203))
 Declaration(ObjectProperty(obo:RO_0040035))
@@ -6933,6 +6935,22 @@ SubObjectPropertyOf(obo:RO_0020103 obo:RO_0002179)
 ObjectPropertyDomain(obo:RO_0020103 obo:UBERON_0001982)
 ObjectPropertyRange(obo:RO_0020103 obo:UBERON_0000061)
 
+# Object Property: obo:RO_0020104 (is neuron)
+
+AnnotationAssertion(obo:IAO_0000115 obo:RO_0020104 "This property only applies to neurons")
+AnnotationAssertion(terms:contributor obo:RO_0020104 <https://orcid.org/0000-0001-6677-8489>)
+AnnotationAssertion(terms:date obo:RO_0020104 "2024-10-23T14:34:52Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label obo:RO_0020104 "is neuron")
+ObjectPropertyDomain(obo:RO_0020104 obo:CL_0000540)
+
+# Object Property: obo:RO_0020105 (is anatomical entity)
+
+AnnotationAssertion(obo:IAO_0000115 obo:RO_0020105 "This property only applies to anatomical entities.")
+AnnotationAssertion(terms:contributor obo:RO_0020105 <https://orcid.org/0000-0001-6677-8489>)
+AnnotationAssertion(terms:date obo:RO_0020105 "2024-10-29T09:55:07Z"^^xsd:dateTime)
+AnnotationAssertion(rdfs:label obo:RO_0020105 "is anatomical entity")
+ObjectPropertyDomain(obo:RO_0020105 obo:UBERON_0001062)
+
 # Object Property: obo:RO_0020202 (has numerator)
 
 AnnotationAssertion(obo:IAO_0000115 obo:RO_0020202 "A relationship between a ratio or proportion and its dividend.")
@@ -7020,6 +7038,10 @@ SubClassOf(obo:BFO_0000015 ObjectAllValuesFrom(obo:RO_0002214 obo:BFO_0000015))
 
 SubClassOf(obo:CHEBI_50906 obo:PATO_0000001)
 
+# Class: obo:CL_0000540 (neuron)
+
+EquivalentClasses(obo:CL_0000540 ObjectHasSelf(obo:RO_0020104))
+
 # Class: obo:GO_0004842 (ubiquitin-protein transferase activity)
 
 SubClassOf(obo:GO_0004842 ObjectHasSelf(obo:RO_0002482))
@@ -7077,6 +7099,10 @@ AnnotationAssertion(obo:IAO_0000119 obo:RO_0002577 "http://www.jbiomedsem.com/co
 AnnotationAssertion(rdfs:label obo:RO_0002577 "system")
 SubClassOf(obo:RO_0002577 obo:BFO_0000040)
 
+# Class: obo:UBERON_0001062 (anatomical entity)
+
+EquivalentClasses(obo:UBERON_0001062 ObjectHasSelf(obo:RO_0020105))
+
 
 ############################
 #   Named Individuals
@@ -7278,6 +7304,7 @@ SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0013002 obo:BFO_0000050) obo:RO_0
 SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0013003 obo:BFO_0000050) obo:RO_0013003)
 SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0013007 obo:BFO_0000050) obo:RO_0013007)
 SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0015001 obo:RO_0015003) obo:RO_0015001)
+SubObjectPropertyOf(ObjectPropertyChain(obo:RO_0020104 obo:BFO_0000050 obo:RO_0020105) obo:RO_0002100)
 SubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf(obo:BFO_0000066) obo:RO_0002234) obo:RO_0003000)
 SubObjectPropertyOf(ObjectPropertyChain(ObjectInverseOf(obo:RO_0002176) obo:RO_0002176) obo:RO_0002170)
 DLSafeRule(Body(ObjectPropertyAtom(obo:RO_0002180 Variable(<urn:swrl:var#w>) Variable(<urn:swrl:var#p>)) ClassAtom(obo:BFO_0000015 Variable(<urn:swrl:var#w>)) ClassAtom(obo:BFO_0000015 Variable(<urn:swrl:var#p>)))Head(ObjectPropertyAtom(obo:RO_0002018 Variable(<urn:swrl:var#w>) Variable(<urn:swrl:var#p>))))