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NTR 'contains measured amount' #726

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merged 20 commits into from
Nov 6, 2023
Merged

NTR 'contains measured amount' #726

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8c10639
Adding RO_0017002 (contains amount) and dependencies
jmwhorton Jun 7, 2023
7677838
Merge pull request #1 from jmwhorton/ntr/contains-amount
jmwhorton Jun 7, 2023
3f6b507
Updating RO_0017002 annotations for consistency.
jmwhorton Jun 19, 2023
71b0bd2
Merge pull request #2 from jmwhorton/ntr/contains-amount
jmwhorton Jun 19, 2023
85d2858
Correcting RO_0017002 to RO_0017005
jmwhorton Jun 20, 2023
2379b07
correcting whitespace
jmwhorton Jun 20, 2023
5dc6571
Merge branch 'master' into master
jmwhorton Jul 6, 2023
bdf2d93
Updating label 'contains amount' to 'contains measured amount'
jmwhorton Jul 6, 2023
dcb48f9
Merge branch 'master' into master
Jul 12, 2023
f67ea0f
Merge branch 'master' into master
Jul 17, 2023
1b13773
Removed OBI terms from other_import, added to obi_terms
jmwhorton Jul 26, 2023
1cbf36b
Added example of usage for RO_0017005 'contains measured amount'
jmwhorton Jul 26, 2023
055d165
Merge branch 'master' into master
Aug 10, 2023
ec7ed63
Adjusting imports to meet standards
jmwhorton Aug 23, 2023
99cdeb5
Merge branch 'master' into master
jmwhorton Aug 23, 2023
7fe8f64
Removing unnecessary declarations
jmwhorton Aug 23, 2023
e2bcc8f
Replacing IAO_0000109 with COB_0000121
jmwhorton Aug 24, 2023
6028f32
Replacing 'dc' with 'terms'
jmwhorton Sep 12, 2023
2f0ec21
Merge branch 'master' into master
jmwhorton Nov 1, 2023
e36acf3
Merge branch 'master' into master
wdduncan Nov 6, 2023
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43 changes: 42 additions & 1 deletion src/ontology/imports/other_import.owl
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Expand Up @@ -18,6 +18,12 @@ Declaration(Class(<http://purl.obolibrary.org/obo/BFO_0000141>))
Declaration(Class(<http://purl.obolibrary.org/obo/OGMS_0000031>))
Declaration(Class(<http://purl.obolibrary.org/obo/PATO_0000001>))
Declaration(Class(<http://purl.obolibrary.org/obo/UPHENO_0001001>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBI_0000047>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBI_0000967>))
Declaration(Class(<http://purl.obolibrary.org/obo/OBI_0000968>))
Declaration(Class(<http://purl.obolibrary.org/obo/IAO_0000027>))
Declaration(Class(<http://purl.obolibrary.org/obo/IAO_0000030>))
Declaration(Class(<http://purl.obolibrary.org/obo/IAO_0000109>))
Declaration(ObjectProperty(<http://purl.obolibrary.org/obo/RO_0002207>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000114>))
Declaration(AnnotationProperty(<http://purl.obolibrary.org/obo/IAO_0000115>))
Expand Down Expand Up @@ -51,6 +57,41 @@ SubClassOf(<http://purl.obolibrary.org/obo/OGMS_0000031> <http://purl.obolibrary
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/UPHENO_0001001> "phenotype"@en)
SubClassOf(<http://purl.obolibrary.org/obo/UPHENO_0001001> <http://purl.obolibrary.org/obo/PATO_0000001>)

# Class: <http://purl.obolibrary.org/obo/OBI_0000967> (container)
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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/OBI_0000967> "A device that can be used to restrict the location of material entities over time"@en)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBI_0000967> "container")
SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000967> <http://purl.obolibrary.org/obo/OBI_0000968>)

# Class: <http://purl.obolibrary.org/obo/OBI_0000968> (device)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBI_0000968> "device")
SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000968> <http://purl.obolibrary.org/obo/OBI_0000047>)

# Class: <http://purl.obolibrary.org/obo/OBI_0000047> (processed material)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/OBI_0000047> "processed material")
SubClassOf(<http://purl.obolibrary.org/obo/OBI_0000047> <http://purl.obolibrary.org/obo/BFO_0000040>)

# Class: <http://purl.obolibrary.org/obo/IAO_0000109> (measurement datum)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000109> "measurement datum")
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000115> <http://purl.obolibrary.org/obo/IAO_0000109> "A measurement datum is an information content entity that is a recording of the output of a measurement such as produced by a device."@en)
SubClassOf(<http://purl.obolibrary.org/obo/IAO_0000109> <http://purl.obolibrary.org/obo/IAO_0000027>)
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# Class: <http://purl.obolibrary.org/obo/IAO_0000027> (data item)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000027> "data item")
SubClassOf(<http://purl.obolibrary.org/obo/IAO_0000027> <http://purl.obolibrary.org/obo/IAO_0000030>)

# Class: <http://purl.obolibrary.org/obo/IAO_0000030> (information content entity)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000030> "information content entity")
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# Class: <http://purl.obolibrary.org/obo/BFO_0000040> (material entity)

AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/BFO_0000040> "material entity")

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AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/IAO_0000078> <http://purl.obolibrary.org/obo/IAO_0000125>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000078> "curation status specification"@en)
Expand All @@ -64,4 +105,4 @@ AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.ob
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0000428> "requires discussion"@en)
AnnotationAssertion(<http://purl.obolibrary.org/obo/IAO_0000114> <http://purl.obolibrary.org/obo/IAO_0100001> <http://purl.obolibrary.org/obo/IAO_0000125>)
AnnotationAssertion(rdfs:label <http://purl.obolibrary.org/obo/IAO_0100001> "term replaced by"@en)
)
)
10 changes: 10 additions & 0 deletions src/ontology/ro-edit.owl
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Expand Up @@ -566,6 +566,7 @@ Declaration(ObjectProperty(obo:RO_0016001))
Declaration(ObjectProperty(obo:RO_0016002))
Declaration(ObjectProperty(obo:RO_0016004))
Declaration(ObjectProperty(obo:RO_0017001))
Declaration(ObjectProperty(obo:RO_0017002))
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Declaration(ObjectProperty(obo:RO_0017003))
Declaration(ObjectProperty(obo:RO_0017004))
Declaration(ObjectProperty(obo:RO_0018001))
Expand Down Expand Up @@ -6488,6 +6489,15 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0017001 "2021-11-08T12:00:00Z"
AnnotationAssertion(oboInOwl:hasBroadSynonym obo:RO_0017001 "utilizes")
AnnotationAssertion(rdfs:label obo:RO_0017001 "device utilizes material"@en)

# Object Property: obo:RO_0017002 (contains amount)

AnnotationAssertion(obo:IAO_0000115 obo:RO_0017002 "A relation between a container and measurement datum that specifies the actual amount of material in the container.")
AnnotationAssertion(dc:contributor obo:RO_0017002 <https://orcid.org/0000-0002-2999-0103>)
AnnotationAssertion(dc:contributor obo:RO_0017002 <https://orcid.org/0000-0002-5714-991X>)
AnnotationAssertion(rdfs:label obo:RO_0017002 "contains amount"@en)
ObjectPropertyDomain(obo:RO_0017002 obo:OBI_0000967)
ObjectPropertyRange(obo:RO_0017002 obo:IAO_0000109)

# Object Property: obo:RO_0017003 (positively correlated with)

AnnotationAssertion(obo:IAO_0000115 obo:RO_0017003 "A relation between entities in which one increases or decreases as the other does the same."@en)
Expand Down