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WIP: collected during relation #759

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merged 11 commits into from
Aug 12, 2024
Merged

WIP: collected during relation #759

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e8696f2
collected during relation
ddooley Oct 2, 2023
b17d837
definition tweak.
ddooley Jan 22, 2024
90ba7bf
Merge branch 'master' into issue-#598-part2
anitacaron Jan 22, 2024
4ca19e7
update `orcidio_import`
anitacaron Jan 22, 2024
69b23d7
Merge branch 'master' into issue-#598-part2
anitacaron Feb 9, 2024
1380b77
normalize ro-edit file
anitacaron Feb 9, 2024
0f6cab0
Merge branch 'master' into issue-#598-part2
anitacaron Mar 28, 2024
f8f8584
Merge branch 'master' into issue-#598-part2
ddooley May 8, 2024
1c2ba04
collected during relation defn simplification
ddooley May 8, 2024
f6b503b
remove misplaced pato term from ro-edit
anitacaron Jul 15, 2024
4fcbc5b
Merge branch 'master' into issue-#598-part2
cmungall Aug 12, 2024
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7 changes: 6 additions & 1 deletion src/ontology/imports/orcidio_import.owl
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Original file line number Diff line number Diff line change
Expand Up @@ -24,9 +24,9 @@ Declaration(NamedIndividual(<https://orcid.org/0000-0002-7073-9172>))
Declaration(NamedIndividual(<https://orcid.org/0000-0002-7463-6306>))
Declaration(NamedIndividual(<https://orcid.org/0000-0002-8461-9745>))
Declaration(NamedIndividual(<https://orcid.org/0000-0002-8688-6599>))
Declaration(NamedIndividual(<https://orcid.org/0000-0002-8844-9165>))
Declaration(NamedIndividual(<https://orcid.org/0000-0003-1617-8244>))
Declaration(NamedIndividual(<https://orcid.org/0000-0003-1813-6857>))

Declaration(NamedIndividual(<https://orcid.org/0000-0003-1834-3856>))
Declaration(NamedIndividual(<https://orcid.org/0000-0003-1909-9269>))
Declaration(NamedIndividual(<https://orcid.org/0000-0003-1940-6740>))
Expand Down Expand Up @@ -113,6 +113,11 @@ AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wik
AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q37649212>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0002-8688-6599> "researcher")
AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q37649212>) rdfs:label <https://orcid.org/0000-0002-8688-6599> "James P. Balhoff")

# Individual: <https://orcid.org/0000-0002-8844-9165> (Damion M Dooley)

AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q91868864>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0002-8844-9165> "researcher (ORCID 0000-0002-8844-9165)")
AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q91868864>) rdfs:label <https://orcid.org/0000-0002-8844-9165> "Damion M Dooley")

# Individual: <https://orcid.org/0000-0003-1617-8244> (Lindsay G Cowell)

AnnotationAssertion(Annotation(<http://purl.org/dc/terms/source> <http://www.wikidata.org/entity/Q89259560>) <http://purl.org/dc/terms/description> <https://orcid.org/0000-0003-1617-8244> "researcher")
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12 changes: 12 additions & 0 deletions src/ontology/ro-edit.owl
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Expand Up @@ -581,6 +581,7 @@ Declaration(ObjectProperty(obo:RO_0017004))
Declaration(ObjectProperty(obo:RO_0017005))
Declaration(ObjectProperty(obo:RO_0017008))
Declaration(ObjectProperty(obo:RO_0017009))
Declaration(ObjectProperty(obo:RO_0017502))
Declaration(ObjectProperty(obo:RO_0018001))
Declaration(ObjectProperty(obo:RO_0018002))
Declaration(ObjectProperty(obo:RO_0018003))
Expand Down Expand Up @@ -6612,6 +6613,17 @@ AnnotationAssertion(oboInOwl:creation_date obo:RO_0017009 "2023-03-29T17:06:06Z"
AnnotationAssertion(oboInOwl:inSubset obo:RO_0017009 obo:RO_0002259)
AnnotationAssertion(rdfs:label obo:RO_0017009 "is owned by"@en)

# Object Property: obo:RO_0017502 (collected during)

AnnotationAssertion(obo:IAO_0000112 obo:RO_0017502 "A thorax specimen was collected during the larval stage."@en)
AnnotationAssertion(obo:IAO_0000112 obo:RO_0017502 "An oyster was collected during low tide."@en)
AnnotationAssertion(obo:IAO_0000115 obo:RO_0017502 "A relation between a material entity and an occurrent in which the material entity is collected during the existence of the occurrent. The material entity is a specimen that is collected for scientific purposes."@en)
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AnnotationAssertion(terms:contributor obo:RO_0017502 <https://orcid.org/0000-0002-8844-9165>)
AnnotationAssertion(terms:date obo:RO_0017502 "2023-09-13T04:12:32Z"^^xsd:dateTime)
AnnotationAssertion(rdfs:label obo:RO_0017502 "collected during"@en)
ObjectPropertyDomain(obo:RO_0017502 obo:BFO_0000040)
ObjectPropertyRange(obo:RO_0017502 obo:BFO_0000003)
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# Object Property: obo:RO_0018001 (is myristoyltransferase activity)

AnnotationAssertion(obo:IAO_0000115 obo:RO_0018001 "Helper relation for OWL definition of RO:0018002 myristoylates")
Expand Down
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