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ohlab

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  1. GRiD GRiD Public

    Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).

    Shell 32 7

  2. SMEG SMEG Public

    Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset

    Shell 20 6

Repositories

Showing 10 of 18 repositories
  • BioMapAI Public
    ohlab/BioMapAI’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Jan 23, 2025
  • Airway_microbial.screen Public

    Data and code for Species- and strain-specific microbial modulation of interferon, innate immunity, and barrier in 2D air-liquid interface respiratory epithelial cultures

    ohlab/Airway_microbial.screen’s past year of commit activity
    0 0 0 0 Updated Jan 17, 2025
  • icht_MAGs Public
    ohlab/icht_MAGs’s past year of commit activity
    0 0 0 0 Updated Nov 14, 2023
  • SC2200969_Nasal30pass Public

    Nasal organoid single cell data

    ohlab/SC2200969_Nasal30pass’s past year of commit activity
    1 0 0 0 Updated Jan 31, 2023
  • S.epi-CRISPRi-and-RNA-Seq Public
    ohlab/S.epi-CRISPRi-and-RNA-Seq’s past year of commit activity
    R 1 1 0 0 Updated Nov 11, 2022
  • MECFS_2021 Public

    Data and code for ME/CFS project 2021

    ohlab/MECFS_2021’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 9, 2022
  • reprDB Public
    ohlab/reprDB’s past year of commit activity
    Shell 1 GPL-3.0 3 3 1 Updated Jul 19, 2022
  • Strain_collection Public
    ohlab/Strain_collection’s past year of commit activity
    0 0 0 0 Updated Mar 1, 2022
  • GRiD Public

    Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).

    ohlab/GRiD’s past year of commit activity
    Shell 32 7 11 0 Updated May 22, 2020
  • SMEG Public

    Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset

    ohlab/SMEG’s past year of commit activity
    Shell 20 6 3 0 Updated May 22, 2020
View all repositories

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