Skip to content

Update Go version to latest Stable release #4

Update Go version to latest Stable release

Update Go version to latest Stable release #4

Workflow file for this run

name: Go
on:
push:
jobs:
build:
runs-on: ubuntu-latest
steps:
- name: Set up Go 1.x
uses: actions/setup-go@v2
with:
go-version: 1.21
- name: Check out code
uses: actions/checkout@v2
- name: Build
run: make build
- name: Store funnel
uses: actions/upload-artifact@v2
with:
name: funnelBin
path: funnel
nextflow:
runs-on: ubuntu-latest
needs: build
steps:
- name: Download funnel
uses: actions/download-artifact@v2
with:
name: funnelBin
path: funnel
- name: Setup tmate session
uses: mxschmitt/action-tmate@v3
- name: Install Nextflow
run: |
git clone https://github.com/nextflow-io/nextflow -b tes-update-1.1
cd nextflow
make compile
- name: Install Nextflow GA4GH-TES plugin
run: |
cat <<EOF >> nextflow.config
plugins {
id 'nf-ga4gh'
}
process.executor = 'tes'
tes.endpoint = 'http://localhost:8000'
EOF
- name: Start Funnel
run: |
chmod +x funnel
./funnel server run &
- name: Run Nextflow test (nf-canary)
run: |
git clone https://github.com/ohsu-comp-bio/nf-canary
cd nf-canary
nextflow run main.nf