Compliance tests debugging

.github/workflows/compliance-test.yaml

@@ -31,67 +31,18 @@ on:
   push:
 
 jobs:
-  build:
-    runs-on: ubuntu-latest
-    container: quay.io/ohsu-comp-bio/slurm
-    steps:
-    - name: Set up Go 1.x
-      uses: actions/setup-go@v2
-      with:
-        go-version: ^1.18
-
-    - name: Check out code
-      uses: actions/checkout@v2
-
-    - name: Build
-      run: make build
-
-    - name: Store funnel
-      uses: actions/upload-artifact@v2
-      with:
-        name: funnelBin
-        path: funnel
-
   compliance:
     strategy:
       fail-fast: false
       matrix:
         version: [1.1.0]
         db: ["mongodb"]
         compute: ["slurm"]
-    needs: build
     runs-on: ubuntu-latest
     container:
       image: quay.io/ohsu-comp-bio/slurm
       options: --hostname slurmctl --cap-add sys_admin
     steps:
-      # Required to access the 'tests/mongo.config.yml' file
-      # Perhaps uploading it as an artifact would be more efficient?
-      - name: Check out code
-        uses: actions/checkout@v2
-
-      - uses: actions/download-artifact@v3
-        with:
-          name: funnelBin
-
-      - name: Start Funnel server
-        run: |
-          touch config.yml
-          if [ ${{ matrix.db }} = "mongodb" ]; then
-            make start-mongodb
-            cat `pwd`/tests/mongo.config.yml >> config.yml
-            # Required for Funnel to connect MongoDB
-            echo "172.17.0.1 localhost" >> /etc/hosts
-          elif [ ${{ matrix.compute }} = "slurm" ]; then
-            cat `pwd`/tests/slurm.config.yml >> config.yml
-            cp config.yml /opt/funnel_config.yml
-            # Start Slurm
-            /usr/local/bin/docker-entrypoint.sh
-          fi
-          chmod +x funnel
-          FLAGS="--config `pwd`/config.yml"
-          ./funnel server run $FLAGS &> funnel.logs &
-
       - name: Install Python 3.7
         run: |
           curl https://pyenv.run | bash
@@ -111,6 +62,7 @@ jobs:
       - name: Install TES compliance suite
         run: |
           cd tes-compliance-suite
+          python3 --version
           python3 -m venv venv
           source venv/bin/activate
           pip install -r requirements.txt