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omnideconv

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  1. immunedeconv immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    R 461 102

  2. omnideconv omnideconv Public

    Unified access to several second-generation deconvolution methods

    HTML 58 10

  3. spacedeconv spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    R 36 7

  4. SimBu SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    R 12 1

  5. deconvExplorer deconvExplorer Public

    R 3 1

  6. omnideconv.github.io omnideconv.github.io Public

    CSS 2

Repositories

Showing 10 of 20 repositories
  • spacedeconv Public

    A unified interface to spatial transcriptomics deconvolution tools

    omnideconv/spacedeconv’s past year of commit activity
    R 36 GPL-3.0 7 2 2 Updated Nov 28, 2024
  • methylDeconv Public

    Runs and compares different methylation based cell type deconvolution algorithms

    omnideconv/methylDeconv’s past year of commit activity
    R 1 0 0 0 Updated Nov 25, 2024
  • SimBu Public

    Simulate pseudo-bulk RNAseq samples from scRNAseq expression data

    omnideconv/SimBu’s past year of commit activity
    R 12 GPL-3.0 1 5 2 Updated Nov 4, 2024
  • deconvExplorer Public
    omnideconv/deconvExplorer’s past year of commit activity
    R 3 1 5 1 Updated Nov 4, 2024
  • omnideconv Public

    Unified access to several second-generation deconvolution methods

    omnideconv/omnideconv’s past year of commit activity
    HTML 58 GPL-3.0 10 21 1 Updated Nov 4, 2024
  • immunedeconv Public

    A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods

    omnideconv/immunedeconv’s past year of commit activity
    R 461 102 30 (1 issue needs help) 3 Updated Nov 4, 2024
  • AutoGeneS Public Forked from theislab/AutoGeneS
    omnideconv/AutoGeneS’s past year of commit activity
    Jupyter Notebook 0 MIT 9 0 0 Updated Oct 2, 2024
  • deconvBench Public

    Comparison of 2nd generation deconvolution methods implemented in omnideconv

    omnideconv/deconvBench’s past year of commit activity
    R 2 0 1 0 Updated Jun 10, 2024
  • scaden Public Forked from KevinMenden/scaden

    Deep Learning based cell composition analysis with Scaden.

    omnideconv/scaden’s past year of commit activity
    Python 0 MIT 27 0 0 Updated Jun 7, 2024
  • CDSeq Public Forked from PelzKo/CDSeq

    CDSeq R package patched and maintained to be used in the omnideconv installation

    omnideconv/CDSeq’s past year of commit activity
    R 0 11 0 0 Updated Mar 29, 2024
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