Version 2.1.0

Major changes

• Added support for SEG DICOM files for segmentation.

• Added support for processing RTDOSE files.

• It is now possible to combine and split masks, and to select the largest mask or mask slice, as part of the image
  processing workflow. Masks can be combines by setting mask_merge = True, which merges all available masks for an
  image into a single mask. This can be useful when, e.g., multiple regions of interest should be assessed as a single
  (possibly internally disconnected) mask. Masks are split using mask_split = True, which separates every disconnected
  region into its own mask that is assessed separately. This is used for splitting multiple lesions inside a single mask
  into multiple separate masks. The largest region of interest in each mask is selected by
  mask_select_largest_region = True. This can be used when, e.g., only the largest lesion of multiple lesions should be
  assessed. Sometimes, only the largest slice (i.e. the slice containing most of the voxels in a mask) should be
  assessed. This is done using mask_select_largest_slice = True. This also forces by_slice = True.

  These mask operations are implemented in the following order: combination -> splitting -> largest region ->
  largest slice.

• Masks from an RT-structure file that shares a frame of reference with an image but does not have a one-to-one
  mapping to its voxel space can now be processed. This facilitates processing of masks from RT structure sets that
  are, e.g., defined on CT images but applied to co-registered PET imaging, or from one MR sequence to another.

Fixes

• Providing a mask consisting of boolean values in a numpy array no longer incorrectly throws an error.
• Configuration parameters from xml files are now processed in the same manner as parameters defined as function
  arguments. The same default values are now used, independent of the parameter source. This fixes a known issue where
  outlier-based resegmentation would occur by default using xml files, whereas the intended default is that no
  resegmentation takes place.
• Masks can now be exported to the file system without throwing an error.
• DICOM files from frontal or sagittal view data are now correctly processed.