Clippy (#75) #63
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: CI | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| jobs: | |
| tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: version info | |
| run: rustc --version; cargo --version; | |
| - name: Run all tests | |
| run: cargo test | |
| - name: Run all tests (no default features) | |
| run: cargo test --no-default-features | |
| wasm: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: Build on wasm32-unknown-unknown | |
| run: | | |
| rustup target add wasm32-unknown-unknown | |
| cargo build --all --no-default-features --target wasm32-unknown-unknown | |
| fmt: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - uses: actions-rs/cargo@v1 | |
| with: | |
| command: fmt | |
| args: --all -- --check | |
| clippy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - uses: actions-rs/cargo@v1 | |
| with: | |
| command: clippy | |
| args: -- -D warnings | |
| bench: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: run benches | |
| run: cargo bench | |
| fuzz: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: nightly | |
| override: true | |
| - name: run fuzz for 3 minutes each | |
| run: | | |
| cargo +nightly install cargo-fuzz | |
| cargo +nightly fuzz run parse_fasta -- -max_total_time=180 | |
| cargo +nightly fuzz run parse_fastq -- -max_total_time=180 | |
| python-bindings: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@master | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| profile: minimal | |
| toolchain: stable | |
| override: true | |
| - name: version info | |
| run: rustc --version; cargo --version; | |
| - name: Run all tests | |
| run: cargo test --features=python_test | |
| - name: Install python headers | |
| run: sudo apt-get update && sudo apt-get install python3-dev python3-pip python3-venv | |
| - name: Install maturin | |
| run: | | |
| python3 -m venv venv | |
| . venv/bin/activate | |
| pip3 install maturin | |
| pip3 show maturin | |
| - name: add library to venv | |
| run: | | |
| . venv/bin/activate | |
| maturin develop --features=python | |
| - name: Run the python tests | |
| run: | | |
| . venv/bin/activate | |
| python test_python.py | |
| - name: compile taxonomy with python bindings | |
| run: | | |
| . venv/bin/activate | |
| maturin build --features=python --release --strip --manylinux=off |