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Merge pull request #59 from onecodex/audy/doc-fix #160

Merge pull request #59 from onecodex/audy/doc-fix

Merge pull request #59 from onecodex/audy/doc-fix #160

Workflow file for this run

name: CI
on:
push:
branches:
- master
pull_request:
jobs:
tests:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: stable
override: true
- name: version info
run: rustc --version; cargo --version;
- name: Run all tests
run: cargo test
python-bindings:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: stable
override: true
- name: version info
run: rustc --version; cargo --version;
- name: Run all tests
run: cargo test --features=python_test
- name: Install python headers
run: sudo apt-get update && sudo apt-get install python3-dev python3-pip python3-venv
- name: Install maturin
run: |
python3 -m venv venv
. venv/bin/activate
pip3 install maturin
pip3 show maturin
- name: add library to venv
run: |
. venv/bin/activate
maturin develop --features=python
- name: Run the python tests
run: |
. venv/bin/activate
python test_python.py
- name: compile taxonomy with python bindings in release mode
run: |
. venv/bin/activate
maturin build --features=python --release --strip --manylinux=off
fmt:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@v3
- uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: stable
override: true
- uses: actions-rs/cargo@v1
with:
command: fmt
args: --all -- --check
clippy:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@master
- uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: stable
override: true
- uses: actions-rs/cargo@v1
with:
command: clippy
bench:
runs-on: ubuntu-latest
steps:
- name: Checkout
uses: actions/checkout@master
- uses: actions-rs/toolchain@v1
with:
profile: minimal
toolchain: stable
override: true
- name: run benches
run: cargo bench